Models, code, and papers for "William T":

##### Review Paper: Inertial Measurement

Aug 08, 2017
William T. Conlin

Applications of inertial measurement units are extremely diverse, and are expected to see a further increase in number due to current trends in robotics as well as recent advances in Micro Electromechanical sensors (MEMS). The traditional method of inertial measurement has depended on costly, power-intensive, error-prone Inertial Measurement Units (IMUs) that represent a single point of failure. Promising areas of current research include methods for combining multiple redundant sensors, which collectively provide more accurate and more dependable estimates of state, and wholly new IMU layouts that seek to reduce error. New types include: gyro-free, timing, wireless, distributed redundant IMUs, and IMUs that incorporate MEMS components for miniaturization in general. This review paper highlights these new research directions and lays out the design and experimental implementation of a complementary filter for inertial measurement.

##### Deep Learning for Multi-Messenger Astrophysics: A Gateway for Discovery in the Big Data Era

This report provides an overview of recent work that harnesses the Big Data Revolution and Large Scale Computing to address grand computational challenges in Multi-Messenger Astrophysics, with a particular emphasis on real-time discovery campaigns. Acknowledging the transdisciplinary nature of Multi-Messenger Astrophysics, this document has been prepared by members of the physics, astronomy, computer science, data science, software and cyberinfrastructure communities who attended the NSF-, DOE- and NVIDIA-funded "Deep Learning for Multi-Messenger Astrophysics: Real-time Discovery at Scale" workshop, hosted at the National Center for Supercomputing Applications, October 17-19, 2018. Highlights of this report include unanimous agreement that it is critical to accelerate the development and deployment of novel, signal-processing algorithms that use the synergy between artificial intelligence (AI) and high performance computing to maximize the potential for scientific discovery with Multi-Messenger Astrophysics. We discuss key aspects to realize this endeavor, namely (i) the design and exploitation of scalable and computationally efficient AI algorithms for Multi-Messenger Astrophysics; (ii) cyberinfrastructure requirements to numerically simulate astrophysical sources, and to process and interpret Multi-Messenger Astrophysics data; (iii) management of gravitational wave detections and triggers to enable electromagnetic and astro-particle follow-ups; (iv) a vision to harness future developments of machine and deep learning and cyberinfrastructure resources to cope with the scale of discovery in the Big Data Era; (v) and the need to build a community that brings domain experts together with data scientists on equal footing to maximize and accelerate discovery in the nascent field of Multi-Messenger Astrophysics.

* 15 pages, no figures. White paper based on the "Deep Learning for Multi-Messenger Astrophysics: Real-time Discovery at Scale" workshop, hosted at NCSA, October 17-19, 2018 http://www.ncsa.illinois.edu/Conferences/DeepLearningLSST/
##### Enabling real-time multi-messenger astrophysics discoveries with deep learning

Multi-messenger astrophysics is a fast-growing, interdisciplinary field that combines data, which vary in volume and speed of data processing, from many different instruments that probe the Universe using different cosmic messengers: electromagnetic waves, cosmic rays, gravitational waves and neutrinos. In this Expert Recommendation, we review the key challenges of real-time observations of gravitational wave sources and their electromagnetic and astroparticle counterparts, and make a number of recommendations to maximize their potential for scientific discovery. These recommendations refer to the design of scalable and computationally efficient machine learning algorithms; the cyber-infrastructure to numerically simulate astrophysical sources, and to process and interpret multi-messenger astrophysics data; the management of gravitational wave detections to trigger real-time alerts for electromagnetic and astroparticle follow-ups; a vision to harness future developments of machine learning and cyber-infrastructure resources to cope with the big-data requirements; and the need to build a community of experts to realize the goals of multi-messenger astrophysics.

* Nature Reviews Physics volume 1, pages 600-608 (2019)
* Invited Expert Recommendation for Nature Reviews Physics. The art work produced by E. A. Huerta and Shawn Rosofsky for this article was used by Carl Conway to design the cover of the October 2019 issue of Nature Reviews Physics
##### A Deep Neural Network for Pixel-Level Electromagnetic Particle Identification in the MicroBooNE Liquid Argon Time Projection Chamber

We have developed a convolutional neural network (CNN) that can make a pixel-level prediction of objects in image data recorded by a liquid argon time projection chamber (LArTPC) for the first time. We describe the network design, training techniques, and software tools developed to train this network. The goal of this work is to develop a complete deep neural network based data reconstruction chain for the MicroBooNE detector. We show the first demonstration of a network's validity on real LArTPC data using MicroBooNE collection plane images. The demonstration is performed for stopping muon and a $\nu_\mu$ charged current neutral pion data samples.

##### Practical Shape Analysis and Segmentation Methods for Point Cloud Models

Oct 25, 2018
Reed M. Williams, Horea T. Ilieş

Current point cloud processing algorithms do not have the capability to automatically extract semantic information from the observed scenes, except in very specialized cases. Furthermore, existing mesh analysis paradigms cannot be directly employed to automatically perform typical shape analysis tasks directly on point cloud models. We present a potent framework for shape analysis, similarity, and segmentation of noisy point cloud models for real objects of engineering interest, models that may be incomplete. The proposed framework relies on spectral methods and the heat diffusion kernel to construct compact shape signatures, and we show that the framework supports a variety of clustering techniques that have traditionally been applied only on mesh models. We developed and implemented one practical and convergent estimate of the Laplace-Beltrami operator for point clouds as well as a number of clustering techniques adapted to work directly on point clouds to produce geometric features of engineering interest. The key advantage of this framework is that it supports practical shape analysis capabilities that operate directly on point cloud models of objects without requiring surface reconstruction or global meshing. We show that the proposed technique is robust against typical noise present in possibly incomplete point clouds, and segment point clouds scanned by depth cameras (e.g. Kinect) into semantically-meaningful sub-shapes.

* 21 pages, 20 figures. To appear in The Journal of Computer Aided Geometric Design's Special Issue on Heat Diffusion Equation and Optimal Transport in Geometry Processing and Computer Graphics
##### Sound Source Localization in a Multipath Environment Using Convolutional Neural Networks

Oct 27, 2017
Eric L. Ferguson, Stefan B. Williams, Craig T. Jin

The propagation of sound in a shallow water environment is characterized by boundary reflections from the sea surface and sea floor. These reflections result in multiple (indirect) sound propagation paths, which can degrade the performance of passive sound source localization methods. This paper proposes the use of convolutional neural networks (CNNs) for the localization of sources of broadband acoustic radiated noise (such as motor vessels) in shallow water multipath environments. It is shown that CNNs operating on cepstrogram and generalized cross-correlogram inputs are able to more reliably estimate the instantaneous range and bearing of transiting motor vessels when the source localization performance of conventional passive ranging methods is degraded. The ensuing improvement in source localization performance is demonstrated using real data collected during an at-sea experiment.

* 5 pages, 5 figures, Final draft of paper submitted to 2018 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) 15-20 April 2018 in Calgary, Alberta, Canada. arXiv admin note: text overlap with arXiv:1612.03505
##### Physical Primitive Decomposition

Sep 13, 2018
Zhijian Liu, William T. Freeman, Joshua B. Tenenbaum, Jiajun Wu

Objects are made of parts, each with distinct geometry, physics, functionality, and affordances. Developing such a distributed, physical, interpretable representation of objects will facilitate intelligent agents to better explore and interact with the world. In this paper, we study physical primitive decomposition---understanding an object through its components, each with physical and geometric attributes. As annotated data for object parts and physics are rare, we propose a novel formulation that learns physical primitives by explaining both an object's appearance and its behaviors in physical events. Our model performs well on block towers and tools in both synthetic and real scenarios; we also demonstrate that visual and physical observations often provide complementary signals. We further present ablation and behavioral studies to better understand our model and contrast it with human performance.

* ECCV 2018. Project page: http://ppd.csail.mit.edu/
##### Visual Dynamics: Stochastic Future Generation via Layered Cross Convolutional Networks

Jul 25, 2018
Tianfan Xue, Jiajun Wu, Katherine L. Bouman, William T. Freeman

We study the problem of synthesizing a number of likely future frames from a single input image. In contrast to traditional methods that have tackled this problem in a deterministic or non-parametric way, we propose to model future frames in a probabilistic manner. Our probabilistic model makes it possible for us to sample and synthesize many possible future frames from a single input image. To synthesize realistic movement of objects, we propose a novel network structure, namely a Cross Convolutional Network; this network encodes image and motion information as feature maps and convolutional kernels, respectively. In experiments, our model performs well on synthetic data, such as 2D shapes and animated game sprites, and on real-world video frames. We present analyses of the learned network representations, showing it is implicitly learning a compact encoding of object appearance and motion. We also demonstrate a few of its applications, including visual analogy-making and video extrapolation.

* IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI), 2018
* Journal preprint of arXiv:1607.02586 (IEEE TPAMI, in press). The first two authors contributed equally to this work
##### Visual Dynamics: Probabilistic Future Frame Synthesis via Cross Convolutional Networks

Jul 09, 2016
Tianfan Xue, Jiajun Wu, Katherine L. Bouman, William T. Freeman

We study the problem of synthesizing a number of likely future frames from a single input image. In contrast to traditional methods, which have tackled this problem in a deterministic or non-parametric way, we propose a novel approach that models future frames in a probabilistic manner. Our probabilistic model makes it possible for us to sample and synthesize many possible future frames from a single input image. Future frame synthesis is challenging, as it involves low- and high-level image and motion understanding. We propose a novel network structure, namely a Cross Convolutional Network to aid in synthesizing future frames; this network structure encodes image and motion information as feature maps and convolutional kernels, respectively. In experiments, our model performs well on synthetic data, such as 2D shapes and animated game sprites, as well as on real-wold videos. We also show that our model can be applied to tasks such as visual analogy-making, and present an analysis of the learned network representations.

* The first two authors contributed equally to this work
##### Faster graphical model identification of tandem mass spectra using peptide word lattices

Oct 29, 2014
Shengjie Wang, John T. Halloran, Jeff A. Bilmes, William S. Noble

Liquid chromatography coupled with tandem mass spectrometry, also known as shotgun proteomics, is a widely-used high-throughput technology for identifying proteins in complex biological samples. Analysis of the tens of thousands of fragmentation spectra produced by a typical shotgun proteomics experiment begins by assigning to each observed spectrum the peptide hypothesized to be responsible for generating the spectrum, typically done by searching each spectrum against a database of peptides. We have recently described a machine learning method---Dynamic Bayesian Network for Rapid Identification of Peptides (DRIP)---that not only achieves state-of-the-art spectrum identification performance on a variety of datasets but also provides a trainable model capable of returning valuable auxiliary information regarding specific peptide-spectrum matches. In this work, we present two significant improvements to DRIP. First, we describe how to use word lattices, which are widely used in natural language processing, to significantly speed up DRIP's computations. To our knowledge, all existing shotgun proteomics search engines compute independent scores between a given observed spectrum and each possible candidate peptide from the database. The key idea of the word lattice is to represent the set of candidate peptides in a single data structure, thereby allowing sharing of redundant computations among the different candidates. We demonstrate that using lattices in conjunction with DRIP leads to speedups on the order of tens across yeast and worm data sets. Second, we introduce a variant of DRIP that uses a discriminative training framework, performing maximum mutual entropy estimation rather than maximum likelihood estimation. This modification improves DRIP's statistical power, enabling us to increase the number of identified spectrum at a 1% false discovery rate on yeast and worm data sets.

##### An Application of CNNs to Time Sequenced One Dimensional Data in Radiation Detection

Aug 28, 2019
Eric T. Moore, William P. Ford, Emma J. Hague, Johanna Turk

A Convolutional Neural Network architecture was used to classify various isotopes of time-sequenced gamma-ray spectra, a typical output of a radiation detection system of a type commonly fielded for security or environmental measurement purposes. A two-dimensional surface (waterfall plot) in time-energy space is interpreted as a monochromatic image and standard image-based CNN techniques are applied. This allows for the time-sequenced aspects of features in the data to be discovered by the network, as opposed to standard algorithms which arbitrarily time bin the data to satisfy the intuition of a human spectroscopist. The CNN architecture and results are presented along with a comparison to conventional techniques. The results of this novel application of image processing techniques to radiation data will be presented along with a comparison to more conventional adaptive methods.

* Proc. SPIE 10986, Algorithms, Technologies, and Applications for Multispectral and Hyperspectral Imagery XXV, 109861C (14 May 2019); https://doi.org/10.1117/12.2519037
* 11 pages, 9 figures, presented: SPIE Defense + Commercial Sensing, 16-18 Apr 2019, Baltimore, MD, United States
##### Smart, Sparse Contours to Represent and Edit Images

Apr 09, 2018
Tali Dekel, Chuang Gan, Dilip Krishnan, Ce Liu, William T. Freeman

We study the problem of reconstructing an image from information stored at contour locations. We show that high-quality reconstructions with high fidelity to the source image can be obtained from sparse input, e.g., comprising less than $6\%$ of image pixels. This is a significant improvement over existing contour-based reconstruction methods that require much denser input to capture subtle texture information and to ensure image quality. Our model, based on generative adversarial networks, synthesizes texture and details in regions where no input information is provided. The semantic knowledge encoded into our model and the sparsity of the input allows to use contours as an intuitive interface for semantically-aware image manipulation: local edits in contour domain translate to long-range and coherent changes in pixel space. We can perform complex structural changes such as changing facial expression by simple edits of contours. Our experiments demonstrate that humans as well as a face recognition system mostly cannot distinguish between our reconstructions and the source images.

* Accepted to CVPR'18; Project page: contour2im.github.io
##### Video Enhancement with Task-Oriented Flow

Nov 24, 2017
Tianfan Xue, Baian Chen, Jiajun Wu, Donglai Wei, William T. Freeman

Many video processing algorithms rely on optical flow to register different frames within a sequence. However, a precise estimation of optical flow is often neither tractable nor optimal for a particular task. In this paper, we propose task-oriented flow (TOFlow), a flow representation tailored for specific video processing tasks. We design a neural network with a motion estimation component and a video processing component. These two parts can be jointly trained in a self-supervised manner to facilitate learning of the proposed TOFlow. We demonstrate that TOFlow outperforms the traditional optical flow on three different video processing tasks: frame interpolation, video denoising/deblocking, and video super-resolution. We also introduce Vimeo-90K, a large-scale, high-quality video dataset for video processing to better evaluate the proposed algorithm.

* Project page: http://toflow.csail.mit.edu
##### A Comparative Evaluation of Approximate Probabilistic Simulation and Deep Neural Networks as Accounts of Human Physical Scene Understanding

Humans demonstrate remarkable abilities to predict physical events in complex scenes. Two classes of models for physical scene understanding have recently been proposed: "Intuitive Physics Engines", or IPEs, which posit that people make predictions by running approximate probabilistic simulations in causal mental models similar in nature to video-game physics engines, and memory-based models, which make judgments based on analogies to stored experiences of previously encountered scenes and physical outcomes. Versions of the latter have recently been instantiated in convolutional neural network (CNN) architectures. Here we report four experiments that, to our knowledge, are the first rigorous comparisons of simulation-based and CNN-based models, where both approaches are concretely instantiated in algorithms that can run on raw image inputs and produce as outputs physical judgments such as whether a stack of blocks will fall. Both approaches can achieve super-human accuracy levels and can quantitatively predict human judgments to a similar degree, but only the simulation-based models generalize to novel situations in ways that people do, and are qualitatively consistent with systematic perceptual illusions and judgment asymmetries that people show.

* Accepted to CogSci 2016 as an oral presentation
##### Best-Buddies Similarity - Robust Template Matching using Mutual Nearest Neighbors

Sep 06, 2016
Shaul Oron, Tali Dekel, Tianfan Xue, William T. Freeman, Shai Avidan

We propose a novel method for template matching in unconstrained environments. Its essence is the Best-Buddies Similarity (BBS), a useful, robust, and parameter-free similarity measure between two sets of points. BBS is based on counting the number of Best-Buddies Pairs (BBPs)--pairs of points in source and target sets, where each point is the nearest neighbor of the other. BBS has several key features that make it robust against complex geometric deformations and high levels of outliers, such as those arising from background clutter and occlusions. We study these properties, provide a statistical analysis that justifies them, and demonstrate the consistent success of BBS on a challenging real-world dataset while using different types of features.

##### Exploiting compositionality to explore a large space of model structures

The recent proliferation of richly structured probabilistic models raises the question of how to automatically determine an appropriate model for a dataset. We investigate this question for a space of matrix decomposition models which can express a variety of widely used models from unsupervised learning. To enable model selection, we organize these models into a context-free grammar which generates a wide variety of structures through the compositional application of a few simple rules. We use our grammar to generically and efficiently infer latent components and estimate predictive likelihood for nearly 2500 structures using a small toolbox of reusable algorithms. Using a greedy search over our grammar, we automatically choose the decomposition structure from raw data by evaluating only a small fraction of all models. The proposed method typically finds the correct structure for synthetic data and backs off gracefully to simpler models under heavy noise. It learns sensible structures for datasets as diverse as image patches, motion capture, 20 Questions, and U.S. Senate votes, all using exactly the same code.

* Appears in Proceedings of the Twenty-Eighth Conference on Uncertainty in Artificial Intelligence (UAI2012)
##### Explanation in Human-AI Systems: A Literature Meta-Review, Synopsis of Key Ideas and Publications, and Bibliography for Explainable AI

This is an integrative review that address the question, "What makes for a good explanation?" with reference to AI systems. Pertinent literatures are vast. Thus, this review is necessarily selective. That said, most of the key concepts and issues are expressed in this Report. The Report encapsulates the history of computer science efforts to create systems that explain and instruct (intelligent tutoring systems and expert systems). The Report expresses the explainability issues and challenges in modern AI, and presents capsule views of the leading psychological theories of explanation. Certain articles stand out by virtue of their particular relevance to XAI, and their methods, results, and key points are highlighted. It is recommended that AI/XAI researchers be encouraged to include in their research reports fuller details on their empirical or experimental methods, in the fashion of experimental psychology research reports: details on Participants, Instructions, Procedures, Tasks, Dependent Variables (operational definitions of the measures and metrics), Independent Variables (conditions), and Control Conditions.

##### Learning to Reconstruct Shapes from Unseen Classes

From a single image, humans are able to perceive the full 3D shape of an object by exploiting learned shape priors from everyday life. Contemporary single-image 3D reconstruction algorithms aim to solve this task in a similar fashion, but often end up with priors that are highly biased by training classes. Here we present an algorithm, Generalizable Reconstruction (GenRe), designed to capture more generic, class-agnostic shape priors. We achieve this with an inference network and training procedure that combine 2.5D representations of visible surfaces (depth and silhouette), spherical shape representations of both visible and non-visible surfaces, and 3D voxel-based representations, in a principled manner that exploits the causal structure of how 3D shapes give rise to 2D images. Experiments demonstrate that GenRe performs well on single-view shape reconstruction, and generalizes to diverse novel objects from categories not seen during training.

* NeurIPS 2018 (Oral). The first two authors contributed equally to this paper. Project page: http://genre.csail.mit.edu/
##### Learning Shape Priors for Single-View 3D Completion and Reconstruction

The problem of single-view 3D shape completion or reconstruction is challenging, because among the many possible shapes that explain an observation, most are implausible and do not correspond to natural objects. Recent research in the field has tackled this problem by exploiting the expressiveness of deep convolutional networks. In fact, there is another level of ambiguity that is often overlooked: among plausible shapes, there are still multiple shapes that fit the 2D image equally well; i.e., the ground truth shape is non-deterministic given a single-view input. Existing fully supervised approaches fail to address this issue, and often produce blurry mean shapes with smooth surfaces but no fine details. In this paper, we propose ShapeHD, pushing the limit of single-view shape completion and reconstruction by integrating deep generative models with adversarially learned shape priors. The learned priors serve as a regularizer, penalizing the model only if its output is unrealistic, not if it deviates from the ground truth. Our design thus overcomes both levels of ambiguity aforementioned. Experiments demonstrate that ShapeHD outperforms state of the art by a large margin in both shape completion and shape reconstruction on multiple real datasets.

* ECCV 2018. The first two authors contributed equally to this work. Project page: http://shapehd.csail.mit.edu/
##### Unsupervised Training for 3D Morphable Model Regression

We present a method for training a regression network from image pixels to 3D morphable model coordinates using only unlabeled photographs. The training loss is based on features from a facial recognition network, computed on-the-fly by rendering the predicted faces with a differentiable renderer. To make training from features feasible and avoid network fooling effects, we introduce three objectives: a batch distribution loss that encourages the output distribution to match the distribution of the morphable model, a loopback loss that ensures the network can correctly reinterpret its own output, and a multi-view identity loss that compares the features of the predicted 3D face and the input photograph from multiple viewing angles. We train a regression network using these objectives, a set of unlabeled photographs, and the morphable model itself, and demonstrate state-of-the-art results.

* Conference on Computer Vision and Pattern Recognition (CVPR), 2018, pp. 8377-8386
* CVPR 2018 version with supplemental material (http://openaccess.thecvf.com/content_cvpr_2018/html/Genova_Unsupervised_Training_for_CVPR_2018_paper.html)