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Add to EdgeThe 2024 Brain Tumor Segmentation (BraTS) Challenge: Glioma Segmentation on Post-treatment MRI
May 28, 2024
Gliomas are the most common malignant primary brain tumors in adults and one of the deadliest types of cancer. There are many challenges in treatment and monitoring due to the genetic diversity and high intrinsic heterogeneity in appearance, shape, histology, and treatment response. Treatments include surgery, radiation, and systemic therapies, with magnetic resonance imaging (MRI) playing a key role in treatment planning and post-treatment longitudinal assessment. The 2024 Brain Tumor Segmentation (BraTS) challenge on post-treatment glioma MRI will provide a community standard and benchmark for state-of-the-art automated segmentation models based on the largest expert-annotated post-treatment glioma MRI dataset. Challenge competitors will develop automated segmentation models to predict four distinct tumor sub-regions consisting of enhancing tissue (ET), surrounding non-enhancing T2/fluid-attenuated inversion recovery (FLAIR) hyperintensity (SNFH), non-enhancing tumor core (NETC), and resection cavity (RC). Models will be evaluated on separate validation and test datasets using standardized performance metrics utilized across the BraTS 2024 cluster of challenges, including lesion-wise Dice Similarity Coefficient and Hausdorff Distance. Models developed during this challenge will advance the field of automated MRI segmentation and contribute to their integration into clinical practice, ultimately enhancing patient care.
Talk Too Much: Poisoning Large Language Models under Token Limit
Apr 24, 2024Mainstream poisoning attacks on large language models (LLMs) typically set a fixed trigger in the input instance and specific responses for triggered queries. However, the fixed trigger setting (e.g., unusual words) may be easily detected by human detection, limiting the effectiveness and practicality in real-world scenarios. To enhance the stealthiness of the trigger, we present a poisoning attack against LLMs that is triggered by a generation/output condition-token limitation, which is a commonly adopted strategy by users for reducing costs. The poisoned model performs normally for output without token limitation, while becomes harmful for output with limited tokens. To achieve this objective, we introduce BrieFool, an efficient attack framework. It leverages the characteristics of generation limitation by efficient instruction sampling and poisoning data generation, thereby influencing the behavior of LLMs under target conditions. Our experiments demonstrate that BrieFool is effective across safety domains and knowledge domains. For instance, with only 20 generated poisoning examples against GPT-3.5-turbo, BrieFool achieves a 100% Attack Success Rate (ASR) and a 9.28/10 average Harmfulness Score (HS) under token limitation conditions while maintaining the benign performance.
Rapid Adoption, Hidden Risks: The Dual Impact of Large Language Model Customization
Feb 15, 2024The increasing demand for customized Large Language Models (LLMs) has led to the development of solutions like GPTs. These solutions facilitate tailored LLM creation via natural language prompts without coding. However, the trustworthiness of third-party custom versions of LLMs remains an essential concern. In this paper, we propose the first instruction backdoor attacks against applications integrated with untrusted customized LLMs (e.g., GPTs). Specifically, these attacks embed the backdoor into the custom version of LLMs by designing prompts with backdoor instructions, outputting the attacker's desired result when inputs contain the pre-defined triggers. Our attack includes 3 levels of attacks: word-level, syntax-level, and semantic-level, which adopt different types of triggers with progressive stealthiness. We stress that our attacks do not require fine-tuning or any modification to the backend LLMs, adhering strictly to GPTs development guidelines. We conduct extensive experiments on 4 prominent LLMs and 5 benchmark text classification datasets. The results show that our instruction backdoor attacks achieve the desired attack performance without compromising utility. Additionally, we propose an instruction-ignoring defense mechanism and demonstrate its partial effectiveness in mitigating such attacks. Our findings highlight the vulnerability and the potential risks of LLM customization such as GPTs.
Quantifying white matter hyperintensity and brain volumes in heterogeneous clinical and low-field portable MRI
Dec 08, 2023
Brain atrophy and white matter hyperintensity (WMH) are critical neuroimaging features for ascertaining brain injury in cerebrovascular disease and multiple sclerosis. Automated segmentation and quantification is desirable but existing methods require high-resolution MRI with good signal-to-noise ratio (SNR). This precludes application to clinical and low-field portable MRI (pMRI) scans, thus hampering large-scale tracking of atrophy and WMH progression, especially in underserved areas where pMRI has huge potential. Here we present a method that segments white matter hyperintensity and 36 brain regions from scans of any resolution and contrast (including pMRI) without retraining. We show results on six public datasets and on a private dataset with paired high- and low-field scans (3T and 64mT), where we attain strong correlation between the WMH ($\rho$=.85) and hippocampal volumes (r=.89) estimated at both fields. Our method is publicly available as part of FreeSurfer, at: http://surfer.nmr.mgh.harvard.edu/fswiki/WMH-SynthSeg.
Cyber Physical System Information Collection: Robot Location and Navigation Method Based on QR Code
Oct 05, 2023
In this paper, we propose a method to estimate the exact location of a camera in a cyber-physical system using the exact geographic coordinates of four feature points stored in QR codes(Quick response codes) and the pixel coordinates of four feature points analyzed from the QR code images taken by the camera. Firstly, the P4P(Perspective 4 Points) algorithm is designed to uniquely determine the initial pose estimation value of the QR coordinate system relative to the camera coordinate system by using the four feature points of the selected QR code. In the second step, the manifold gradient optimization algorithm is designed. The rotation matrix and displacement vector are taken as the initial values of iteration, and the iterative optimization is carried out to improve the positioning accuracy and obtain the rotation matrix and displacement vector with higher accuracy. The third step is to convert the pose of the QR coordinate system with respect to the camera coordinate system to the pose of the AGV(Automated Guided Vehicle) with respect to the world coordinate system. Finally, the performance of manifold gradient optimization algorithm and P4P analytical algorithm are simulated and compared under the same conditions.One can see that the performance of the manifold gradient optimization algorithm proposed in this paper is much better than that of the P4P analytic algorithm when the signal-to-noise ratio is small.With the increase of the signal-to-noise ratio,the performance of the P4P analytic algorithm approaches that of the manifold gradient optimization algorithm.when the noise is same,the performance of manifold gradient optimization algorithm is better when there are more feature points.
Why is the winner the best?
Mar 30, 2023
International benchmarking competitions have become fundamental for the comparative performance assessment of image analysis methods. However, little attention has been given to investigating what can be learnt from these competitions. Do they really generate scientific progress? What are common and successful participation strategies? What makes a solution superior to a competing method? To address this gap in the literature, we performed a multi-center study with all 80 competitions that were conducted in the scope of IEEE ISBI 2021 and MICCAI 2021. Statistical analyses performed based on comprehensive descriptions of the submitted algorithms linked to their rank as well as the underlying participation strategies revealed common characteristics of winning solutions. These typically include the use of multi-task learning (63%) and/or multi-stage pipelines (61%), and a focus on augmentation (100%), image preprocessing (97%), data curation (79%), and postprocessing (66%). The "typical" lead of a winning team is a computer scientist with a doctoral degree, five years of experience in biomedical image analysis, and four years of experience in deep learning. Two core general development strategies stood out for highly-ranked teams: the reflection of the metrics in the method design and the focus on analyzing and handling failure cases. According to the organizers, 43% of the winning algorithms exceeded the state of the art but only 11% completely solved the respective domain problem. The insights of our study could help researchers (1) improve algorithm development strategies when approaching new problems, and (2) focus on open research questions revealed by this work.
Neural Implicit k-Space for Binning-free Non-Cartesian Cardiac MR Imaging
Dec 16, 2022
In this work, we propose a novel image reconstruction framework that directly learns a neural implicit representation in k-space for ECG-triggered non-Cartesian Cardiac Magnetic Resonance Imaging (CMR). While existing methods bin acquired data from neighboring time points to reconstruct one phase of the cardiac motion, our framework allows for a continuous, binning-free, and subject-specific k-space representation.We assign a unique coordinate that consists of time, coil index, and frequency domain location to each sampled k-space point. We then learn the subject-specific mapping from these unique coordinates to k-space intensities using a multi-layer perceptron with frequency domain regularization. During inference, we obtain a complete k-space for Cartesian coordinates and an arbitrary temporal resolution. A simple inverse Fourier transform recovers the image, eliminating the need for density compensation and costly non-uniform Fourier transforms for non-Cartesian data. This novel imaging framework was tested on 42 radially sampled datasets from 6 subjects. The proposed method outperforms other techniques qualitatively and quantitatively using data from four and one heartbeat(s) and 30 cardiac phases. Our results for one heartbeat reconstruction of 50 cardiac phases show improved artifact removal and spatio-temporal resolution, leveraging the potential for real-time CMR.
STAR: Zero-Shot Chinese Character Recognition with Stroke- and Radical-Level Decompositions
Oct 16, 2022
Zero-shot Chinese character recognition has attracted rising attention in recent years. Existing methods for this problem are mainly based on either certain low-level stroke-based decomposition or medium-level radical-based decomposition. Considering that the stroke- and radical-level decompositions can provide different levels of information, we propose an effective zero-shot Chinese character recognition method by combining them. The proposed method consists of a training stage and an inference stage. In the training stage, we adopt two similar encoder-decoder models to yield the estimates of stroke and radical encodings, which together with the true encodings are then used to formalize the associated stroke and radical losses for training. A similarity loss is introduced to regularize stroke and radical encoders to yield features of the same characters with high correlation. In the inference stage, two key modules, i.e., the stroke screening module (SSM) and feature matching module (FMM) are introduced to tackle the deterministic and confusing cases respectively. In particular, we introduce an effective stroke rectification scheme in FMM to enlarge the candidate set of characters for final inference. Numerous experiments over three benchmark datasets covering the handwritten, printed artistic and street view scenarios are conducted to demonstrate the effectiveness of the proposed method. Numerical results show that the proposed method outperforms the state-of-the-art methods in both character and radical zero-shot settings, and maintains competitive performance in the traditional seen character setting.
Adaptive Local Implicit Image Function for Arbitrary-scale Super-resolution
Aug 07, 2022
Image representation is critical for many visual tasks. Instead of representing images discretely with 2D arrays of pixels, a recent study, namely local implicit image function (LIIF), denotes images as a continuous function where pixel values are expansion by using the corresponding coordinates as inputs. Due to its continuous nature, LIIF can be adopted for arbitrary-scale image super-resolution tasks, resulting in a single effective and efficient model for various up-scaling factors. However, LIIF often suffers from structural distortions and ringing artifacts around edges, mostly because all pixels share the same model, thus ignoring the local properties of the image. In this paper, we propose a novel adaptive local image function (A-LIIF) to alleviate this problem. Specifically, our A-LIIF consists of two main components: an encoder and a expansion network. The former captures cross-scale image features, while the latter models the continuous up-scaling function by a weighted combination of multiple local implicit image functions. Accordingly, our A-LIIF can reconstruct the high-frequency textures and structures more accurately. Experiments on multiple benchmark datasets verify the effectiveness of our method. Our codes are available at \url{https://github.com/LeeHW-THU/A-LIIF}.
What Makes for Automatic Reconstruction of Pulmonary Segments
Jul 14, 2022
3D reconstruction of pulmonary segments plays an important role in surgical treatment planning of lung cancer, which facilitates preservation of pulmonary function and helps ensure low recurrence rates. However, automatic reconstruction of pulmonary segments remains unexplored in the era of deep learning. In this paper, we investigate what makes for automatic reconstruction of pulmonary segments. First and foremost, we formulate, clinically and geometrically, the anatomical definitions of pulmonary segments, and propose evaluation metrics adhering to these definitions. Second, we propose ImPulSe (Implicit Pulmonary Segment), a deep implicit surface model designed for pulmonary segment reconstruction. The automatic reconstruction of pulmonary segments by ImPulSe is accurate in metrics and visually appealing. Compared with canonical segmentation methods, ImPulSe outputs continuous predictions of arbitrary resolutions with higher training efficiency and fewer parameters. Lastly, we experiment with different network inputs to analyze what matters in the task of pulmonary segment reconstruction. Our code is available at https://github.com/M3DV/ImPulSe.