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Add to EdgeSwitched auxiliary loss for robust training of transformer models for histopathological image segmentation
Aug 21, 2023
Functional tissue Units (FTUs) are cell population neighborhoods local to a particular organ performing its main function. The FTUs provide crucial information to the pathologist in understanding the disease affecting a particular organ by providing information at the cellular level. In our research, we have developed a model to segment multi-organ FTUs across 5 organs namely: the kidney, large intestine, lung, prostate and spleen by utilizing the HuBMAP + HPA - Hacking the Human Body competition dataset. We propose adding shifted auxiliary loss for training models like the transformers to overcome the diminishing gradient problem which poses a challenge towards optimal training of deep models. Overall, our model achieved a dice score of 0.793 on the public dataset and 0.778 on the private dataset and shows a 1% improvement with the use of the proposed method. The findings also bolster the use of transformers models for dense prediction tasks in the field of medical image analysis. The study assists in understanding the relationships between cell and tissue organization thereby providing a useful medium to look at the impact of cellular functions on human health.
