Add to Chrome
Add to Firefox
Add to EdgeBarnabas Poczos
Task-Based MoE for Multitask Multilingual Machine Translation
Sep 11, 2023
Mixture-of-experts (MoE) architecture has been proven a powerful method for diverse tasks in training deep models in many applications. However, current MoE implementations are task agnostic, treating all tokens from different tasks in the same manner. In this work, we instead design a novel method that incorporates task information into MoE models at different granular levels with shared dynamic task-based adapters. Our experiments and analysis show the advantages of our approaches over the dense and canonical MoE models on multi-task multilingual machine translations. With task-specific adapters, our models can additionally generalize to new tasks efficiently.
Objective-Agnostic Enhancement of Molecule Properties via Multi-Stage VAE
Sep 10, 2023
Variational autoencoder (VAE) is a popular method for drug discovery and various architectures and pipelines have been proposed to improve its performance. However, VAE approaches are known to suffer from poor manifold recovery when the data lie on a low-dimensional manifold embedded in a higher dimensional ambient space [Dai and Wipf, 2019]. The consequences of it in drug discovery are somewhat under-explored. In this paper, we explore applying a multi-stage VAE approach, that can improve manifold recovery on a synthetic dataset, to the field of drug discovery. We experimentally evaluate our multi-stage VAE approach using the ChEMBL dataset and demonstrate its ability to improve the property statistics of generated molecules substantially from pre-existing methods without incorporating property predictors into the training pipeline. We further fine-tune our models on two curated and much smaller molecule datasets that target different proteins. Our experiments show an increase in the number of active molecules generated by the multi-stage VAE in comparison to their one-stage equivalent. For each of the two tasks, our baselines include methods that use learned property predictors to incorporate target metrics directly into the training objective and we discuss complications that arise with this methodology.
Improving Molecule Properties Through 2-Stage VAE
Dec 06, 2022
Variational autoencoder (VAE) is a popular method for drug discovery and there had been a great deal of architectures and pipelines proposed to improve its performance. But the VAE model itself suffers from deficiencies such as poor manifold recovery when data lie on low-dimensional manifold embedded in higher dimensional ambient space and they manifest themselves in each applications differently. The consequences of it in drug discovery is somewhat under-explored. In this paper, we study how to improve the similarity of the data generated via VAE and the training dataset by improving manifold recovery via a 2-stage VAE where the second stage VAE is trained on the latent space of the first one. We experimentally evaluated our approach using the ChEMBL dataset as well as a polymer datasets. In both dataset, the 2-stage VAE method is able to improve the property statistics significantly from a pre-existing method.
Modeling Task Effects on Meaning Representation in the Brain via Zero-Shot MEG Prediction
Sep 17, 2020
How meaning is represented in the brain is still one of the big open questions in neuroscience. Does a word (e.g., bird) always have the same representation, or does the task under which the word is processed alter its representation (answering "can you eat it?" versus "can it fly?")? The brain activity of subjects who read the same word while performing different semantic tasks has been shown to differ across tasks. However, it is still not understood how the task itself contributes to this difference. In the current work, we study Magnetoencephalography (MEG) brain recordings of participants tasked with answering questions about concrete nouns. We investigate the effect of the task (i.e. the question being asked) on the processing of the concrete noun by predicting the millisecond-resolution MEG recordings as a function of both the semantics of the noun and the task. Using this approach, we test several hypotheses about the task-stimulus interactions by comparing the zero-shot predictions made by these hypotheses for novel tasks and nouns not seen during training. We find that incorporating the task semantics significantly improves the prediction of MEG recordings, across participants. The improvement occurs 475-550ms after the participants first see the word, which corresponds to what is considered to be the ending time of semantic processing for a word. These results suggest that only the end of semantic processing of a word is task-dependent, and pose a challenge for future research to formulate new hypotheses for earlier task effects as a function of the task and stimuli.
Robust Handwriting Recognition with Limited and Noisy Data
Aug 18, 2020
Despite the advent of deep learning in computer vision, the general handwriting recognition problem is far from solved. Most existing approaches focus on handwriting datasets that have clearly written text and carefully segmented labels. In this paper, we instead focus on learning handwritten characters from maintenance logs, a constrained setting where data is very limited and noisy. We break the problem into two consecutive stages of word segmentation and word recognition respectively and utilize data augmentation techniques to train both stages. Extensive comparisons with popular baselines for scene-text detection and word recognition show that our system achieves a lower error rate and is more suited to handle noisy and difficult documents
Nonlinear ISA with Auxiliary Variables for Learning Speech Representations
Jul 25, 2020
This paper extends recent work on nonlinear Independent Component Analysis (ICA) by introducing a theoretical framework for nonlinear Independent Subspace Analysis (ISA) in the presence of auxiliary variables. Observed high dimensional acoustic features like log Mel spectrograms can be considered as surface level manifestations of nonlinear transformations over individual multivariate sources of information like speaker characteristics, phonological content etc. Under assumptions of energy based models we use the theory of nonlinear ISA to propose an algorithm that learns unsupervised speech representations whose subspaces are independent and potentially highly correlated with the original non-stationary multivariate sources. We show how nonlinear ICA with auxiliary variables can be extended to a generic identifiable model for subspaces as well while also providing sufficient conditions for the identifiability of these high dimensional subspaces. Our proposed methodology is generic and can be integrated with standard unsupervised approaches to learn speech representations with subspaces that can theoretically capture independent higher order speech signals. We evaluate the gains of our algorithm when integrated with the Autoregressive Predictive Decoding (APC) model by showing empirical results on the speaker verification and phoneme recognition tasks.
Covariate Distribution Aware Meta-learning
Jul 08, 2020
Meta-learning has proven to be successful at few-shot learning across the regression, classification and reinforcement learning paradigms. Recent approaches have adopted Bayesian interpretations to improve gradient based meta-learners by quantifying the uncertainty of the post-adaptation estimates. Most of these works almost completely ignore the latent relationship between the covariate distribution (p(x)) of a task and the corresponding conditional distribution p(y|x). In this paper, we identify the need to explicitly model the meta-distribution over the task covariates in a hierarchical Bayesian framework. We begin by introducing a graphical model that explicitly leverages very few samples drawn from p(x) to better infer the posterior over the optimal parameters of the conditional distribution (p(y|x)) for each task. Based on this model we provide an inference strategy and a corresponding meta-algorithm that explicitly accounts for the meta-distribution over task covariates. Finally, we demonstrate the significant gains of our proposed algorithm on a synthetic regression dataset.
Politeness Transfer: A Tag and Generate Approach
May 01, 2020
This paper introduces a new task of politeness transfer which involves converting non-polite sentences to polite sentences while preserving the meaning. We also provide a dataset of more than 1.39 instances automatically labeled for politeness to encourage benchmark evaluations on this new task. We design a tag and generate pipeline that identifies stylistic attributes and subsequently generates a sentence in the target style while preserving most of the source content. For politeness as well as five other transfer tasks, our model outperforms the state-of-the-art methods on automatic metrics for content preservation, with a comparable or better performance on style transfer accuracy. Additionally, our model surpasses existing methods on human evaluations for grammaticality, meaning preservation and transfer accuracy across all the six style transfer tasks. The data and code is located at https://github.com/tag-and-generate.
Robust Density Estimation under Besov IPM Losses
Apr 18, 2020
We study minimax convergence rates of nonparametric density estimation in the Huber contamination model, in which a proportion of the data comes from an unknown outlier distribution. We provide the first results for this problem under a large family of losses, called Besov integral probability metrics (IPMs), that includes $\mathcal{L}^p$, Wasserstein, Kolmogorov-Smirnov, and other common distances between probability distributions. Specifically, under a range of smoothness assumptions on the population and outlier distributions, we show that a re-scaled thresholding wavelet series estimator achieves minimax optimal convergence rates under a wide variety of losses. Finally, based on connections that have recently been shown between nonparametric density estimation under IPM losses and generative adversarial networks (GANs), we show that certain GAN architectures also achieve these minimax rates.
Adaptive Sampling Distributed Stochastic Variance Reduced Gradient for Heterogeneous Distributed Datasets
Feb 20, 2020
We study distributed optimization algorithms for minimizing the average of \emph{heterogeneous} functions distributed across several machines with a focus on communication efficiency. In such settings, naively using the classical stochastic gradient descent (SGD) or its variants (e.g., SVRG) with a uniform sampling of machines typically yields poor performance. It often leads to the dependence of convergence rate on maximum Lipschitz constant of gradients across the devices. In this paper, we propose a novel \emph{adaptive} sampling of machines specially catered to these settings. Our method relies on an adaptive estimate of local Lipschitz constants base on the information of past gradients. We show that the new way improves the dependence of convergence rate from maximum Lipschitz constant to \emph{average} Lipschitz constant across machines, thereby, significantly accelerating the convergence. Our experiments demonstrate that our method indeed speeds up the convergence of the standard SVRG algorithm in heterogeneous environments.