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Viral Load Inference in Non-Adaptive Pooled Testing
Mar 14, 2024
Medical diagnostic testing can be made significantly more efficient using pooled testing protocols. These typically require a sparse infection signal and use either binary or real-valued entries of O(1). However, existing methods do not allow for inferring viral loads which span many orders of magnitude. We develop a message passing algorithm coupled with a PCR (Polymerase Chain Reaction) specific noise function to allow accurate inference of realistic viral load signals. This work is in the non-adaptive setting and could open the possibility of efficient screening where viral load determination is clinically important.
Scalable Node-Disjoint and Edge-Disjoint Multi-wavelength Routing
Jul 01, 2021
Probabilistic message-passing algorithms are developed for routing transmissions in multi-wavelength optical communication networks, under node and edge-disjoint routing constraints and for various objective functions. Global routing optimization is a hard computational task on its own but is made much more difficult under the node/edge-disjoint constraints and in the presence of multiple wavelengths, a problem which dominates routing efficiency in real optical communication networks that carry most of the world's Internet traffic. The scalable principled method we have developed is exact on trees but provides good approximate solutions on locally tree-like graphs. It accommodates a variety of objective functions that correspond to low latency, load balancing and consolidation of routes, and can be easily extended to include heterogeneous signal-to-noise values on edges and a restriction on the available wavelengths per edge. It can be used for routing and managing transmissions on existing topologies as well as for designing and modifying optical communication networks. Additionally, it provides the tool for settling an open and much debated question on the merit of wavelength-switching nodes and the added capabilities they provide. The methods have been tested on generated networks such as random-regular, Erd\H{o}s R\'{e}nyi and power-law graphs, as well as on the UK and US optical communication networks. They show excellent performance with respect to existing methodology on small networks and have been scaled up to network sizes that are beyond the reach of most existing algorithms.
The Space of Functions Computed by Deep Layered Machines
May 21, 2020
We study the space of functions computed by random layered machines, including deep neural networks, and Boolean circuits. Investigating the distribution of Boolean functions computed on the recurrent and layer-dependent architectures, we find that it is the same in both models. Depending on the initial conditions and computing elements used, we characterize the space of functions computed at the large depth limit and show that the macroscopic entropy of Boolean functions is either monotonically increasing or decreasing with the growing depth.
Scalable Influence Estimation Without Sampling
Dec 29, 2019
In a diffusion process on a network, how many nodes are expected to be influenced by a set of initial spreaders? This natural problem, often referred to as influence estimation, boils down to computing the marginal probability that a given node is active at a given time when the process starts from specified initial condition. Among many other applications, this task is crucial for a well-studied problem of influence maximization: finding optimal spreaders in a social network that maximize the influence spread by a certain time horizon. Indeed, influence estimation needs to be called multiple times for comparing candidate seed sets. Unfortunately, in many models of interest an exact computation of marginals is #P-hard. In practice, influence is often estimated using Monte-Carlo sampling methods that require a large number of runs for obtaining a high-fidelity prediction, especially at large times. It is thus desirable to develop analytic techniques as an alternative to sampling methods. Here, we suggest an algorithm for estimating the influence function in popular independent cascade model based on a scalable dynamic message-passing approach. This method has a computational complexity of a single Monte-Carlo simulation and provides an upper bound on the expected spread on a general graph, yielding exact answer for treelike networks. We also provide dynamic message-passing equations for a stochastic version of the linear threshold model. The resulting saving of a potentially large sampling factor in the running time compared to simulation-based techniques hence makes it possible to address large-scale problem instances.
Large Deviation Analysis of Function Sensitivity in Random Deep Neural Networks
Oct 13, 2019
Mean field theory has been successfully used to analyze deep neural networks (DNN) in the infinite size limit. Given the finite size of realistic DNN, we utilize the large deviation theory and path integral analysis to study the deviation of functions represented by DNN from their typical mean field solutions. The parameter perturbations investigated include weight sparsification (dilution) and binarization, which are commonly used in model simplification, for both ReLU and sign activation functions. We find that random networks with ReLU activation are more robust to parameter perturbations with respect to their counterparts with sign activation, which arguably is reflected in the simplicity of the functions they generate.
Exploring the Function Space of Deep-Learning Machines
Aug 09, 2018
The function space of deep-learning machines is investigated by studying growth in the entropy of functions of a given error with respect to a reference function, realized by a deep-learning machine. Using physics-inspired methods we study both sparsely and densely-connected architectures to discover a layer-wise convergence of candidate functions, marked by a corresponding reduction in entropy when approaching the reference function, gain insight into the importance of having a large number of layers, and observe phase transitions as the error increases.
* New examples of networks with ReLU activation and convolutional networks are included