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End-to-end Deformable Attention Graph Neural Network for Single-view Liver Mesh Reconstruction
Mar 13, 2023
Intensity modulated radiotherapy (IMRT) is one of the most common modalities for treating cancer patients. One of the biggest challenges is precise treatment delivery that accounts for varying motion patterns originating from free-breathing. Currently, image-guided solutions for IMRT is limited to 2D guidance due to the complexity of 3D tracking solutions. We propose a novel end-to-end attention graph neural network model that generates in real-time a triangular shape of the liver based on a reference segmentation obtained at the preoperative phase and a 2D MRI coronal slice taken during the treatment. Graph neural networks work directly with graph data and can capture hidden patterns in non-Euclidean domains. Furthermore, contrary to existing methods, it produces the shape entirely in a mesh structure and correctly infers mesh shape and position based on a surrogate image. We define two on-the-fly approaches to make the correspondence of liver mesh vertices with 2D images obtained during treatment. Furthermore, we introduce a novel task-specific identity loss to constrain the deformation of the liver in the graph neural network to limit phenomenons such as flying vertices or mesh holes. The proposed method achieves results with an average error of 3.06 +- 0.7 mm and Chamfer distance with L2 norm of 63.14 +- 27.28.
3D B-mode ultrasound speckle reduction using deep learning for 3D registration applications
Aug 03, 2020
Ultrasound (US) speckles are granular patterns which can impede image post-processing tasks, such as image segmentation and registration. Conventional filtering approaches are commonly used to remove US speckles, while their main drawback is long run-time in a 3D scenario. Although a few studies were conducted to remove 2D US speckles using deep learning, to our knowledge, there is no study to perform speckle reduction of 3D B-mode US using deep learning. In this study, we propose a 3D dense U-Net model to process 3D US B-mode data from a clinical US system. The model's results were applied to 3D registration. We show that our deep learning framework can obtain similar suppression and mean preservation index (1.066) on speckle reduction when compared to conventional filtering approaches (0.978), while reducing the runtime by two orders of magnitude. Moreover, it is found that the speckle reduction using our deep learning model contributes to improving the 3D registration performance. The mean square error of 3D registration on 3D data using 3D U-Net speckle reduction is reduced by half compared to that with speckles.