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Add to EdgeMining experimental data from Materials Science literature with Large Language Models
Jan 19, 2024
This study is dedicated to evaluating the capabilities of advanced large language models (LLMs) such as GPT-3.5-Turbo, GPT-4, and GPT-4-Turbo in the extraction of structured information from scientific documents within the field of materials science. We introduce a novel methodology for the comparative analysis of intricate material expressions, emphasising the standardisation of chemical formulas to tackle the complexities inherent in materials science information assessment. To this end, we primarily focus on two critical tasks of information extraction: (i) a named entity recognition (NER) of studied materials and physical properties and (ii) a relation extraction (RE) between these entities. The performance of LLMs in executing these tasks is benchmarked against traditional models based on the BERT architecture and rule-based approaches. For NER, LLMs fail to outperform the baseline with zero-shot prompting and exhibit only limited improvement with few-shot prompting. However, for RE, a GPT-3.5-Turbo fine-tuned with the appropriate strategy outperforms all models, including the baseline. Without any fine-tuning, GPT-4 and GPT-4-Turbo display remarkable reasoning and relationship extraction capabilities after being provided with merely a couple of examples, surpassing the baseline. Overall, the results suggest that although LLMs demonstrate relevant reasoning skills in connecting concepts, for tasks requiring extracting complex domain-specific entities like materials, specialised models are currently a better choice.
Semi-automatic staging area for high-quality structured data extraction from scientific literature
Sep 19, 2023
In this study, we propose a staging area for ingesting new superconductors' experimental data in SuperCon that is machine-collected from scientific articles. Our objective is to enhance the efficiency of updating SuperCon while maintaining or enhancing the data quality. We present a semi-automatic staging area driven by a workflow combining automatic and manual processes on the extracted database. An anomaly detection automatic process aims to pre-screen the collected data. Users can then manually correct any errors through a user interface tailored to simplify the data verification on the original PDF documents. Additionally, when a record is corrected, its raw data is collected and utilised to improve machine learning models as training data. Evaluation experiments demonstrate that our staging area significantly improves curation quality. We compare the interface with the traditional manual approach of reading PDF documents and recording information in an Excel document. Using the interface boosts the precision and recall by 6% and 50%, respectively to an average increase of 40% in F1-score.
Automatic Extraction of Materials and Properties from Superconductors Scientific Literature
Oct 26, 2022
The automatic extraction of materials and related properties from the scientific literature is gaining attention in data-driven materials science (Materials Informatics). In this paper, we discuss Grobid-superconductors, our solution for automatically extracting superconductor material names and respective properties from text. Built as a Grobid module, it combines machine learning and heuristic approaches in a multi-step architecture that supports input data as raw text or PDF documents. Using Grobid-superconductors, we built SuperCon2, a database of 40324 materials and properties records from 37700 papers. The material (or sample) information is represented by name, chemical formula, and material class, and is characterized by shape, doping, substitution variables for components, and substrate as adjoined information. The properties include the Tc superconducting critical temperature and, when available, applied pressure with the Tc measurement method.