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Spatial-aware Transformer-GRU Framework for Enhanced Glaucoma Diagnosis from 3D OCT Imaging
Mar 08, 2024
Glaucoma, a leading cause of irreversible blindness, necessitates early detection for accurate and timely intervention to prevent irreversible vision loss. In this study, we present a novel deep learning framework that leverages the diagnostic value of 3D Optical Coherence Tomography (OCT) imaging for automated glaucoma detection. In this framework, we integrate a pre-trained Vision Transformer on retinal data for rich slice-wise feature extraction and a bidirectional Gated Recurrent Unit for capturing inter-slice spatial dependencies. This dual-component approach enables comprehensive analysis of local nuances and global structural integrity, crucial for accurate glaucoma diagnosis. Experimental results on a large dataset demonstrate the superior performance of the proposed method over state-of-the-art ones, achieving an F1-score of 93.58%, Matthews Correlation Coefficient (MCC) of 73.54%, and AUC of 95.24%. The framework's ability to leverage the valuable information in 3D OCT data holds significant potential for enhancing clinical decision support systems and improving patient outcomes in glaucoma management.
BEE-NET: A deep neural network to identify in-the-wild Bodily Expression of Emotions
Feb 21, 2024In this study, we investigate how environmental factors, specifically the scenes and objects involved, can affect the expression of emotions through body language. To this end, we introduce a novel multi-stream deep convolutional neural network named BEE-NET. We also propose a new late fusion strategy that incorporates meta-information on places and objects as prior knowledge in the learning process. Our proposed probabilistic pooling model leverages this information to generate a joint probability distribution of both available and anticipated non-available contextual information in latent space. Importantly, our fusion strategy is differentiable, allowing for end-to-end training and capturing of hidden associations among data points without requiring further post-processing or regularisation. To evaluate our deep model, we use the Body Language Database (BoLD), which is currently the largest available database for the Automatic Identification of the in-the-wild Bodily Expression of Emotions (AIBEE). Our experimental results demonstrate that our proposed approach surpasses the current state-of-the-art in AIBEE by a margin of 2.07%, achieving an Emotional Recognition Score of 66.33%.
Deep Learning and Computer Vision for Glaucoma Detection: A Review
Jul 31, 2023
Glaucoma is the leading cause of irreversible blindness worldwide and poses significant diagnostic challenges due to its reliance on subjective evaluation. However, recent advances in computer vision and deep learning have demonstrated the potential for automated assessment. In this paper, we survey recent studies on AI-based glaucoma diagnosis using fundus, optical coherence tomography, and visual field images, with a particular emphasis on deep learning-based methods. We provide an updated taxonomy that organizes methods into architectural paradigms and includes links to available source code to enhance the reproducibility of the methods. Through rigorous benchmarking on widely-used public datasets, we reveal performance gaps in generalizability, uncertainty estimation, and multimodal integration. Additionally, our survey curates key datasets while highlighting limitations such as scale, labeling inconsistencies, and bias. We outline open research challenges and detail promising directions for future studies. This survey is expected to be useful for both AI researchers seeking to translate advances into practice and ophthalmologists aiming to improve clinical workflows and diagnosis using the latest AI outcomes.
Pain level and pain-related behaviour classification using GRU-based sparsely-connected RNNs
Dec 20, 2022
There is a growing body of studies on applying deep learning to biometrics analysis. Certain circumstances, however, could impair the objective measures and accuracy of the proposed biometric data analysis methods. For instance, people with chronic pain (CP) unconsciously adapt specific body movements to protect themselves from injury or additional pain. Because there is no dedicated benchmark database to analyse this correlation, we considered one of the specific circumstances that potentially influence a person's biometrics during daily activities in this study and classified pain level and pain-related behaviour in the EmoPain database. To achieve this, we proposed a sparsely-connected recurrent neural networks (s-RNNs) ensemble with the gated recurrent unit (GRU) that incorporates multiple autoencoders using a shared training framework. This architecture is fed by multidimensional data collected from inertial measurement unit (IMU) and surface electromyography (sEMG) sensors. Furthermore, to compensate for variations in the temporal dimension that may not be perfectly represented in the latent space of s-RNNs, we fused hand-crafted features derived from information-theoretic approaches with represented features in the shared hidden state. We conducted several experiments which indicate that the proposed method outperforms the state-of-the-art approaches in classifying both pain level and pain-related behaviour.
A multi-stream convolutional neural network for classification of progressive MCI in Alzheimer's disease using structural MRI images
Mar 03, 2022
Early diagnosis of Alzheimer's disease and its prodromal stage, also known as mild cognitive impairment (MCI), is critical since some patients with progressive MCI will develop the disease. We propose a multi-stream deep convolutional neural network fed with patch-based imaging data to classify stable MCI and progressive MCI. First, we compare MRI images of Alzheimer's disease with cognitively normal subjects to identify distinct anatomical landmarks using a multivariate statistical test. These landmarks are then used to extract patches that are fed into the proposed multi-stream convolutional neural network to classify MRI images. Next, we train the architecture in a separate scenario using samples from Alzheimer's disease images, which are anatomically similar to the progressive MCI ones and cognitively normal images to compensate for the lack of progressive MCI training data. Finally, we transfer the trained model weights to the proposed architecture in order to fine-tune the model using progressive MCI and stable MCI data. Experimental results on the ADNI-1 dataset indicate that our method outperforms existing methods for MCI classification, with an F1-score of 85.96%.
ADVISE: ADaptive Feature Relevance and VISual Explanations for Convolutional Neural Networks
Mar 02, 2022
To equip Convolutional Neural Networks (CNNs) with explainability, it is essential to interpret how opaque models take specific decisions, understand what causes the errors, improve the architecture design, and identify unethical biases in the classifiers. This paper introduces ADVISE, a new explainability method that quantifies and leverages the relevance of each unit of the feature map to provide better visual explanations. To this end, we propose using adaptive bandwidth kernel density estimation to assign a relevance score to each unit of the feature map with respect to the predicted class. We also propose an evaluation protocol to quantitatively assess the visual explainability of CNN models. We extensively evaluate our idea in the image classification task using AlexNet, VGG16, ResNet50, and Xception pretrained on ImageNet. We compare ADVISE with the state-of-the-art visual explainable methods and show that the proposed method outperforms competing approaches in quantifying feature-relevance and visual explainability while maintaining competitive time complexity. Our experiments further show that ADVISE fulfils the sensitivity and implementation independence axioms while passing the sanity checks. The implementation is accessible for reproducibility purposes on https://github.com/dehshibi/ADVISE.
A deep convolutional neural network for classification of Aedes albopictus mosquitoes
Oct 29, 2021
Monitoring the spread of disease-carrying mosquitoes is a first and necessary step to control severe diseases such as dengue, chikungunya, Zika or yellow fever. Previous citizen science projects have been able to obtain large image datasets with linked geo-tracking information. As the number of international collaborators grows, the manual annotation by expert entomologists of the large amount of data gathered by these users becomes too time demanding and unscalable, posing a strong need for automated classification of mosquito species from images. We introduce the application of two Deep Convolutional Neural Networks in a comparative study to automate this classification task. We use the transfer learning principle to train two state-of-the-art architectures on the data provided by the Mosquito Alert project, obtaining testing accuracy of 94%. In addition, we applied explainable models based on the Grad-CAM algorithm to visualise the most discriminant regions of the classified images, which coincide with the white band stripes located at the legs, abdomen, and thorax of mosquitoes of the Aedes albopictus species. The model allows us to further analyse the classification errors. Visual Grad-CAM models show that they are linked to poor acquisition conditions and strong image occlusions.
On the use of uncertainty in classifying Aedes Albopictus mosquitoes
Oct 29, 2021
The re-emergence of mosquito-borne diseases (MBDs), which kill hundreds of thousands of people each year, has been attributed to increased human population, migration, and environmental changes. Convolutional neural networks (CNNs) have been used by several studies to recognise mosquitoes in images provided by projects such as Mosquito Alert to assist entomologists in identifying, monitoring, and managing MBD. Nonetheless, utilising CNNs to automatically label input samples could involve incorrect predictions, which may mislead future epidemiological studies. Furthermore, CNNs require large numbers of manually annotated data. In order to address the mentioned issues, this paper proposes using the Monte Carlo Dropout method to estimate the uncertainty scores in order to rank the classified samples to reduce the need for human supervision in recognising Aedes albopictus mosquitoes. The estimated uncertainty was also used in an active learning framework, where just a portion of the data from large training sets was manually labelled. The experimental results show that the proposed classification method with rejection outperforms the competing methods by improving overall performance and reducing entomologist annotation workload. We also provide explainable visualisations of the different regions that contribute to a set of samples' uncertainty assessment.
A supervised active learning method for identifying critical nodes in Wireless Sensor Network
Apr 29, 2020
Energy Efficiency of a wireless sensor network (WSN) relies on its main characteristics, including hop-number, user's location, allocated power, and relay. Identifying nodes, which have more impact on these characteristics, is, however, subject to a substantial computational overhead and energy consumption. In this paper, we proposed an active learning approach to address the computational overhead of identifying critical nodes in a WSN. The proposed approach can overcome biasing in identifying non-critical nodes and needs much less effort in fine-tuning to adapt to the dynamic nature of WSN. This method benefits from the cooperation of clustering and classification modules to iteratively decrease the required number of data in a typical supervised learning scenario and to increase the accuracy in the presence of uninformative examples, i.e., non-critical nodes. Experiments show that the proposed method has more flexibility, compared to the state-of-the-art, to be employed in large scale WSN environments, the fifth-generation mobile networks (5G), and massively distributed IoT (i.e., sensor networks), where it can prolong the network lifetime.
VICSOM: VIsual Clues from SOcial Media for psychological assessment
May 15, 2019
Sharing multimodal information (typically images, videos or text) in Social Network Sites (SNS) occupies a relevant part of our time. The particular way how users expose themselves in SNS can provide useful information to infer human behaviors. This paper proposes to use multimodal data gathered from Instagram accounts to predict the perceived prototypical needs described in Glasser's choice theory. The contribution is two-fold: (i) we provide a large multimodal database from Instagram public profiles (more than 30,000 images and text captions) annotated by expert Psychologists on each perceived behavior according to Glasser's theory, and (ii) we propose to automate the recognition of the (unconsciously) perceived needs by the users. Particularly, we propose a baseline using three different feature sets: visual descriptors based on pixel images (SURF and Visual Bag of Words), a high-level descriptor based on the automated scene description using Convolutional Neural Networks, and a text-based descriptor (Word2vec) obtained from processing the captions provided by the users. Finally, we propose a multimodal fusion of these descriptors obtaining promising results in the multi-label classification problem.