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Towards Biologically Plausible and Private Gene Expression Data Generation
Feb 07, 2024
Generative models trained with Differential Privacy (DP) are becoming increasingly prominent in the creation of synthetic data for downstream applications. Existing literature, however, primarily focuses on basic benchmarking datasets and tends to report promising results only for elementary metrics and relatively simple data distributions. In this paper, we initiate a systematic analysis of how DP generative models perform in their natural application scenarios, specifically focusing on real-world gene expression data. We conduct a comprehensive analysis of five representative DP generation methods, examining them from various angles, such as downstream utility, statistical properties, and biological plausibility. Our extensive evaluation illuminates the unique characteristics of each DP generation method, offering critical insights into the strengths and weaknesses of each approach, and uncovering intriguing possibilities for future developments. Perhaps surprisingly, our analysis reveals that most methods are capable of achieving seemingly reasonable downstream utility, according to the standard evaluation metrics considered in existing literature. Nevertheless, we find that none of the DP methods are able to accurately capture the biological characteristics of the real dataset. This observation suggests a potential over-optimistic assessment of current methodologies in this field and underscores a pressing need for future enhancements in model design.
Privacy-Aware Document Visual Question Answering
Dec 15, 2023Document Visual Question Answering (DocVQA) is a fast growing branch of document understanding. Despite the fact that documents contain sensitive or copyrighted information, none of the current DocVQA methods offers strong privacy guarantees. In this work, we explore privacy in the domain of DocVQA for the first time. We highlight privacy issues in state of the art multi-modal LLM models used for DocVQA, and explore possible solutions. Specifically, we focus on the invoice processing use case as a realistic, widely used scenario for document understanding, and propose a large scale DocVQA dataset comprising invoice documents and associated questions and answers. We employ a federated learning scheme, that reflects the real-life distribution of documents in different businesses, and we explore the use case where the ID of the invoice issuer is the sensitive information to be protected. We demonstrate that non-private models tend to memorise, behaviour that can lead to exposing private information. We then evaluate baseline training schemes employing federated learning and differential privacy in this multi-modal scenario, where the sensitive information might be exposed through any of the two input modalities: vision (document image) or language (OCR tokens). Finally, we design an attack exploiting the memorisation effect of the model, and demonstrate its effectiveness in probing different DocVQA models.
A Unified View of Differentially Private Deep Generative Modeling
Sep 27, 2023The availability of rich and vast data sources has greatly advanced machine learning applications in various domains. However, data with privacy concerns comes with stringent regulations that frequently prohibited data access and data sharing. Overcoming these obstacles in compliance with privacy considerations is key for technological progress in many real-world application scenarios that involve privacy sensitive data. Differentially private (DP) data publishing provides a compelling solution, where only a sanitized form of the data is publicly released, enabling privacy-preserving downstream analysis and reproducible research in sensitive domains. In recent years, various approaches have been proposed for achieving privacy-preserving high-dimensional data generation by private training on top of deep neural networks. In this paper, we present a novel unified view that systematizes these approaches. Our view provides a joint design space for systematically deriving methods that cater to different use cases. We then discuss the strengths, limitations, and inherent correlations between different approaches, aiming to shed light on crucial aspects and inspire future research. We conclude by presenting potential paths forward for the field of DP data generation, with the aim of steering the community toward making the next important steps in advancing privacy-preserving learning.
Client-specific Property Inference against Secure Aggregation in Federated Learning
Mar 07, 2023
Federated learning has become a widely used paradigm for collaboratively training a common model among different participants with the help of a central server that coordinates the training. Although only the model parameters or other model updates are exchanged during the federated training instead of the participant's data, many attacks have shown that it is still possible to infer sensitive information such as membership, property, or outright reconstruction of participant data. Although differential privacy is considered an effective solution to protect against privacy attacks, it is also criticized for its negative effect on utility. Another possible defense is to use secure aggregation which allows the server to only access the aggregated update instead of each individual one, and it is often more appealing because it does not degrade model quality. However, combining only the aggregated updates, which are generated by a different composition of clients in every round, may still allow the inference of some client-specific information. In this paper, we show that simple linear models can effectively capture client-specific properties only from the aggregated model updates due to the linearity of aggregation. We formulate an optimization problem across different rounds in order to infer a tested property of every client from the output of the linear models, for example, whether they have a specific sample in their training data (membership inference) or whether they misbehave and attempt to degrade the performance of the common model by poisoning attacks. Our reconstruction technique is completely passive and undetectable. We demonstrate the efficacy of our approach on several scenarios which shows that secure aggregation provides very limited privacy guarantees in practice. The source code will be released upon publication.
Fed-GLOSS-DP: Federated, Global Learning using Synthetic Sets with Record Level Differential Privacy
Feb 02, 2023
This work proposes Fed-GLOSS-DP, a novel approach to privacy-preserving learning that uses synthetic data to train federated models. In our approach, the server recovers an approximation of the global loss landscape in a local neighborhood based on synthetic samples received from the clients. In contrast to previous, point-wise, gradient-based, linear approximation (such as FedAvg), our formulation enables a type of global optimization that is particularly beneficial in non-IID federated settings. We also present how it rigorously complements record-level differential privacy. Extensive results show that our novel formulation gives rise to considerable improvements in terms of convergence speed and communication costs. We argue that our new approach to federated learning can provide a potential path toward reconciling privacy and accountability by sending differentially private, synthetic data instead of gradient updates. The source code will be released upon publication.
Private Set Generation with Discriminative Information
Nov 07, 2022
Differentially private data generation techniques have become a promising solution to the data privacy challenge -- it enables sharing of data while complying with rigorous privacy guarantees, which is essential for scientific progress in sensitive domains. Unfortunately, restricted by the inherent complexity of modeling high-dimensional distributions, existing private generative models are struggling with the utility of synthetic samples. In contrast to existing works that aim at fitting the complete data distribution, we directly optimize for a small set of samples that are representative of the distribution under the supervision of discriminative information from downstream tasks, which is generally an easier task and more suitable for private training. Our work provides an alternative view for differentially private generation of high-dimensional data and introduces a simple yet effective method that greatly improves the sample utility of state-of-the-art approaches.
* NeurIPS 2022, 19 pages
Practical Challenges in Differentially-Private Federated Survival Analysis of Medical Data
Feb 08, 2022
Survival analysis or time-to-event analysis aims to model and predict the time it takes for an event of interest to happen in a population or an individual. In the medical context this event might be the time of dying, metastasis, recurrence of cancer, etc. Recently, the use of neural networks that are specifically designed for survival analysis has become more popular and an attractive alternative to more traditional methods. In this paper, we take advantage of the inherent properties of neural networks to federate the process of training of these models. This is crucial in the medical domain since data is scarce and collaboration of multiple health centers is essential to make a conclusive decision about the properties of a treatment or a disease. To ensure the privacy of the datasets, it is common to utilize differential privacy on top of federated learning. Differential privacy acts by introducing random noise to different stages of training, thus making it harder for an adversary to extract details about the data. However, in the realistic setting of small medical datasets and only a few data centers, this noise makes it harder for the models to converge. To address this problem, we propose DPFed-post which adds a post-processing stage to the private federated learning scheme. This extra step helps to regulate the magnitude of the noisy average parameter update and easier convergence of the model. For our experiments, we choose 3 real-world datasets in the realistic setting when each health center has only a few hundred records, and we show that DPFed-post successfully increases the performance of the models by an average of up to $17\%$ compared to the standard differentially private federated learning scheme.
Constrained Differentially Private Federated Learning for Low-bandwidth Devices
Feb 27, 2021
Federated learning becomes a prominent approach when different entities want to learn collaboratively a common model without sharing their training data. However, Federated learning has two main drawbacks. First, it is quite bandwidth inefficient as it involves a lot of message exchanges between the aggregating server and the participating entities. This bandwidth and corresponding processing costs could be prohibitive if the participating entities are, for example, mobile devices. Furthermore, although federated learning improves privacy by not sharing data, recent attacks have shown that it still leaks information about the training data. This paper presents a novel privacy-preserving federated learning scheme. The proposed scheme provides theoretical privacy guarantees, as it is based on Differential Privacy. Furthermore, it optimizes the model accuracy by constraining the model learning phase on few selected weights. Finally, as shown experimentally, it reduces the upstream and downstream bandwidth by up to 99.9% compared to standard federated learning, making it practical for mobile systems.
Compression Boosts Differentially Private Federated Learning
Nov 10, 2020
Federated Learning allows distributed entities to train a common model collaboratively without sharing their own data. Although it prevents data collection and aggregation by exchanging only parameter updates, it remains vulnerable to various inference and reconstruction attacks where a malicious entity can learn private information about the participants' training data from the captured gradients. Differential Privacy is used to obtain theoretically sound privacy guarantees against such inference attacks by noising the exchanged update vectors. However, the added noise is proportional to the model size which can be very large with modern neural networks. This can result in poor model quality. In this paper, compressive sensing is used to reduce the model size and hence increase model quality without sacrificing privacy. We show experimentally, using 2 datasets, that our privacy-preserving proposal can reduce the communication costs by up to 95% with only a negligible performance penalty compared to traditional non-private federated learning schemes.
Federated Learning in Adversarial Settings
Oct 15, 2020
Federated Learning enables entities to collaboratively learn a shared prediction model while keeping their training data locally. It prevents data collection and aggregation and, therefore, mitigates the associated privacy risks. However, it still remains vulnerable to various security attacks where malicious participants aim at degrading the generated model, inserting backdoors, or inferring other participants' training data. This paper presents a new federated learning scheme that provides different trade-offs between robustness, privacy, bandwidth efficiency, and model accuracy. Our scheme uses biased quantization of model updates and hence is bandwidth efficient. It is also robust against state-of-the-art backdoor as well as model degradation attacks even when a large proportion of the participant nodes are malicious. We propose a practical differentially private extension of this scheme which protects the whole dataset of participating entities. We show that this extension performs as efficiently as the non-private but robust scheme, even with stringent privacy requirements but are less robust against model degradation and backdoor attacks. This suggests a possible fundamental trade-off between Differential Privacy and robustness.