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Graph Neural Networks for Protein-Protein Interactions -- A Short Survey
Apr 16, 2024
Protein-protein interactions (PPIs) play key roles in a broad range of biological processes. Numerous strategies have been proposed for predicting PPIs, and among them, graph-based methods have demonstrated promising outcomes owing to the inherent graph structure of PPI networks. This paper reviews various graph-based methodologies, and discusses their applications in PPI prediction. We classify these approaches into two primary groups based on their model structures. The first category employs Graph Neural Networks (GNN) or Graph Convolutional Networks (GCN), while the second category utilizes Graph Attention Networks (GAT), Graph Auto-Encoders and Graph-BERT. We highlight the distinctive methodologies of each approach in managing the graph-structured data inherent in PPI networks and anticipate future research directions in this domain.
Blockchain-empowered Federated Learning: Benefits, Challenges, and Solutions
Mar 01, 2024
Federated learning (FL) is a distributed machine learning approach that protects user data privacy by training models locally on clients and aggregating them on a parameter server. While effective at preserving privacy, FL systems face limitations such as single points of failure, lack of incentives, and inadequate security. To address these challenges, blockchain technology is integrated into FL systems to provide stronger security, fairness, and scalability. However, blockchain-empowered FL (BC-FL) systems introduce additional demands on network, computing, and storage resources. This survey provides a comprehensive review of recent research on BC-FL systems, analyzing the benefits and challenges associated with blockchain integration. We explore why blockchain is applicable to FL, how it can be implemented, and the challenges and existing solutions for its integration. Additionally, we offer insights on future research directions for the BC-FL system.
Online Parameter Identification of Generalized Non-cooperative Game
Oct 14, 2023This work studies the parameter identification problem of a generalized non-cooperative game, where each player's cost function is influenced by an observable signal and some unknown parameters. We consider the scenario where equilibrium of the game at some observable signals can be observed with noises, whereas our goal is to identify the unknown parameters with the observed data. Assuming that the observable signals and the corresponding noise-corrupted equilibriums are acquired sequentially, we construct this parameter identification problem as online optimization and introduce a novel online parameter identification algorithm. To be specific, we construct a regularized loss function that balances conservativeness and correctiveness, where the conservativeness term ensures that the new estimates do not deviate significantly from the current estimates, while the correctiveness term is captured by the Karush-Kuhn-Tucker conditions. We then prove that when the players' cost functions are linear with respect to the unknown parameters and the learning rate of the online parameter identification algorithm satisfies \mu_k \propto 1/\sqrt{k}, along with other assumptions, the regret bound of the proposed algorithm is O(\sqrt{K}). Finally, we conduct numerical simulations on a Nash-Cournot problem to demonstrate that the performance of the online identification algorithm is comparable to that of the offline setting.
MMTSA: Multimodal Temporal Segment Attention Network for Efficient Human Activity Recognition
Oct 14, 2022
Multimodal sensors (e.g., visual, non-visual, and wearable) provide complementary information to develop robust perception systems for recognizing activities. However, most existing algorithms use dense sampling and heterogeneous sub-network to extract unimodal features and fuse them at the end of their framework, which causes data redundancy, lack of complementary multimodal information and high computational cost. In this paper, we propose a new novel multimodal neural architecture based on RGB and IMU wearable sensors (e.g., accelerometer, gyroscope) for human activity recognition called Multimodal Temporal Segment Attention Network (MMTSA). MMTSA first employs a multimodal data isomorphism mechanism based on Gramian Angular Field (GAF) and then applies a novel multimodal sparse sampling method to reduce redundancy. Moreover, we propose an inter-segment attention module in MMTSA to fuse multimodal features effectively and efficiently. We demonstrate the importance of imu data imaging and attention mechanism in human activity recognition by rigorous evaluation on three public datasets, and achieve superior improvements ($11.13\%$ on the MMAct dataset) than the previous state-of-the-art methods. The code is available at: https://github.com/THU-CS-PI/MMTSA.
Dynamic Bicycle Dispatching of Dockless Public Bicycle-sharing Systems using Multi-objective Reinforcement Learning
Jan 19, 2021
As a new generation of Public Bicycle-sharing Systems (PBS), the dockless PBS (DL-PBS) is an important application of cyber-physical systems and intelligent transportation. How to use AI to provide efficient bicycle dispatching solutions based on dynamic bicycle rental demand is an essential issue for DL-PBS. In this paper, we propose a dynamic bicycle dispatching algorithm based on multi-objective reinforcement learning (MORL-BD) to provide the optimal bicycle dispatching solution for DL-PBS. We model the DL-PBS system from the perspective of CPS and use deep learning to predict the layout of bicycle parking spots and the dynamic demand of bicycle dispatching. We define the multi-route bicycle dispatching problem as a multi-objective optimization problem by considering the optimization objectives of dispatching costs, dispatch truck's initial load, workload balance among the trucks, and the dynamic balance of bicycle supply and demand. On this basis, the collaborative multi-route bicycle dispatching problem among multiple dispatch trucks is modeled as a multi-agent MORL model. All dispatch paths between parking spots are defined as state spaces, and the reciprocal of dispatching costs is defined as a reward. Each dispatch truck is equipped with an agent to learn the optimal dispatch path in the dynamic DL-PBS network. We create an elite list to store the Pareto optimal solutions of bicycle dispatch paths found in each action, and finally, get the Pareto frontier. Experimental results on the actual DL-PBS systems show that compared with existing methods, MORL-BD can find a higher quality Pareto frontier with less execution time.
Dynamic Planning of Bicycle Stations in Dockless Public Bicycle-sharing System Using Gated Graph Neural Network
Jan 19, 2021
Benefiting from convenient cycling and flexible parking locations, the Dockless Public Bicycle-sharing (DL-PBS) network becomes increasingly popular in many countries. However, redundant and low-utility stations waste public urban space and maintenance costs of DL-PBS vendors. In this paper, we propose a Bicycle Station Dynamic Planning (BSDP) system to dynamically provide the optimal bicycle station layout for the DL-PBS network. The BSDP system contains four modules: bicycle drop-off location clustering, bicycle-station graph modeling, bicycle-station location prediction, and bicycle-station layout recommendation. In the bicycle drop-off location clustering module, candidate bicycle stations are clustered from each spatio-temporal subset of the large-scale cycling trajectory records. In the bicycle-station graph modeling module, a weighted digraph model is built based on the clustering results and inferior stations with low station revenue and utility are filtered. Then, graph models across time periods are combined to create a graph sequence model. In the bicycle-station location prediction module, the GGNN model is used to train the graph sequence data and dynamically predict bicycle stations in the next period. In the bicycle-station layout recommendation module, the predicted bicycle stations are fine-tuned according to the government urban management plan, which ensures that the recommended station layout is conducive to city management, vendor revenue, and user convenience. Experiments on actual DL-PBS networks verify the effectiveness, accuracy and feasibility of the proposed BSDP system.
A Survey on Applications of Artificial Intelligence in Fighting Against COVID-19
Jul 04, 2020
The COVID-19 pandemic caused by the SARS-CoV-2 virus has spread rapidly worldwide, leading to a global outbreak. Most governments, enterprises, and scientific research institutions are participating in the COVID-19 struggle to curb the spread of the pandemic. As a powerful tool against COVID-19, artificial intelligence (AI) technologies are widely used in combating this pandemic. In this survey, we investigate the main scope and contributions of AI in combating COVID-19 from the aspects of disease detection and diagnosis, virology and pathogenesis, drug and vaccine development, and epidemic and transmission prediction. In addition, we summarize the available data and resources that can be used for AI-based COVID-19 research. Finally, the main challenges and potential directions of AI in fighting against COVID-19 are discussed. Currently, AI mainly focuses on medical image inspection, genomics, drug development, and transmission prediction, and thus AI still has great potential in this field. This survey presents medical and AI researchers with a comprehensive view of the existing and potential applications of AI technology in combating COVID-19 with the goal of inspiring researches to continue to maximize the advantages of AI and big data to fight COVID-19.
A Domain Adaptive Density Clustering Algorithm for Data with Varying Density Distribution
Nov 23, 2019
As one type of efficient unsupervised learning methods, clustering algorithms have been widely used in data mining and knowledge discovery with noticeable advantages. However, clustering algorithms based on density peak have limited clustering effect on data with varying density distribution (VDD), equilibrium distribution (ED), and multiple domain-density maximums (MDDM), leading to the problems of sparse cluster loss and cluster fragmentation. To address these problems, we propose a Domain-Adaptive Density Clustering (DADC) algorithm, which consists of three steps: domain-adaptive density measurement, cluster center self-identification, and cluster self-ensemble. For data with VDD features, clusters in sparse regions are often neglected by using uniform density peak thresholds, which results in the loss of sparse clusters. We define a domain-adaptive density measurement method based on K-Nearest Neighbors (KNN) to adaptively detect the density peaks of different density regions. We treat each data point and its KNN neighborhood as a subgroup to better reflect its density distribution in a domain view. In addition, for data with ED or MDDM features, a large number of density peaks with similar values can be identified, which results in cluster fragmentation. We propose a cluster center self-identification and cluster self-ensemble method to automatically extract the initial cluster centers and merge the fragmented clusters. Experimental results demonstrate that compared with other comparative algorithms, the proposed DADC algorithm can obtain more reasonable clustering results on data with VDD, ED and MDDM features. Benefitting from a few parameter requirements and non-iterative nature, DADC achieves low computational complexity and is suitable for large-scale data clustering.
Distributed Deep Learning Model for Intelligent Video Surveillance Systems with Edge Computing
Apr 12, 2019
In this paper, we propose a Distributed Intelligent Video Surveillance (DIVS) system using Deep Learning (DL) algorithms and deploy it in an edge computing environment. We establish a multi-layer edge computing architecture and a distributed DL training model for the DIVS system. The DIVS system can migrate computing workloads from the network center to network edges to reduce huge network communication overhead and provide low-latency and accurate video analysis solutions. We implement the proposed DIVS system and address the problems of parallel training, model synchronization, and workload balancing. Task-level parallel and model-level parallel training methods are proposed to further accelerate the video analysis process. In addition, we propose a model parameter updating method to achieve model synchronization of the global DL model in a distributed EC environment. Moreover, a dynamic data migration approach is proposed to address the imbalance of workload and computational power of edge nodes. Experimental results showed that the EC architecture can provide elastic and scalable computing power, and the proposed DIVS system can efficiently handle video surveillance and analysis tasks.
A Periodicity-based Parallel Time Series Prediction Algorithm in Cloud Computing Environments
Oct 17, 2018
In the era of big data, practical applications in various domains continually generate large-scale time-series data. Among them, some data show significant or potential periodicity characteristics, such as meteorological and financial data. It is critical to efficiently identify the potential periodic patterns from massive time-series data and provide accurate predictions. In this paper, a Periodicity-based Parallel Time Series Prediction (PPTSP) algorithm for large-scale time-series data is proposed and implemented in the Apache Spark cloud computing environment. To effectively handle the massive historical datasets, a Time Series Data Compression and Abstraction (TSDCA) algorithm is presented, which can reduce the data scale as well as accurately extracting the characteristics. Based on this, we propose a Multi-layer Time Series Periodic Pattern Recognition (MTSPPR) algorithm using the Fourier Spectrum Analysis (FSA) method. In addition, a Periodicity-based Time Series Prediction (PTSP) algorithm is proposed. Data in the subsequent period are predicted based on all previous period models, in which a time attenuation factor is introduced to control the impact of different periods on the prediction results. Moreover, to improve the performance of the proposed algorithms, we propose a parallel solution on the Apache Spark platform, using the Streaming real-time computing module. To efficiently process the large-scale time-series datasets in distributed computing environments, Distributed Streams (DStreams) and Resilient Distributed Datasets (RDDs) are used to store and calculate these datasets. Extensive experimental results show that our PPTSP algorithm has significant advantages compared with other algorithms in terms of prediction accuracy and performance.