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RaffeSDG: Random Frequency Filtering enabled Single-source Domain Generalization for Medical Image Segmentation
May 02, 2024
Deep learning models often encounter challenges in making accurate inferences when there are domain shifts between the source and target data. This issue is particularly pronounced in clinical settings due to the scarcity of annotated data resulting from the professional and private nature of medical data. Despite the existence of decent solutions, many of them are hindered in clinical settings due to limitations in data collection and computational complexity. To tackle domain shifts in data-scarce medical scenarios, we propose a Random frequency filtering enabled Single-source Domain Generalization algorithm (RaffeSDG), which promises robust out-of-domain inference with segmentation models trained on a single-source domain. A filter-based data augmentation strategy is first proposed to promote domain variability within a single-source domain by introducing variations in frequency space and blending homologous samples. Then Gaussian filter-based structural saliency is also leveraged to learn robust representations across augmented samples, further facilitating the training of generalizable segmentation models. To validate the effectiveness of RaffeSDG, we conducted extensive experiments involving out-of-domain inference on segmentation tasks for three human tissues imaged by four diverse modalities. Through thorough investigations and comparisons, compelling evidence was observed in these experiments, demonstrating the potential and generalizability of RaffeSDG. The code is available at https://github.com/liamheng/Non-IID_Medical_Image_Segmentation.
LASER: Tuning-Free LLM-Driven Attention Control for Efficient Text-conditioned Image-to-Animation
Apr 23, 2024Revolutionary advancements in text-to-image models have unlocked new dimensions for sophisticated content creation, e.g., text-conditioned image editing, allowing us to edit the diverse images that convey highly complex visual concepts according to the textual guidance. Despite being promising, existing methods focus on texture- or non-rigid-based visual manipulation, which struggles to produce the fine-grained animation of smooth text-conditioned image morphing without fine-tuning, i.e., due to their highly unstructured latent space. In this paper, we introduce a tuning-free LLM-driven attention control framework, encapsulated by the progressive process of LLM planning, prompt-Aware editing, StablE animation geneRation, abbreviated as LASER. LASER employs a large language model (LLM) to refine coarse descriptions into detailed prompts, guiding pre-trained text-to-image models for subsequent image generation. We manipulate the model's spatial features and self-attention mechanisms to maintain animation integrity and enable seamless morphing directly from text prompts, eliminating the need for additional fine-tuning or annotations. Our meticulous control over spatial features and self-attention ensures structural consistency in the images. This paper presents a novel framework integrating LLMs with text-to-image models to create high-quality animations from a single text input. We also propose a Text-conditioned Image-to-Animation Benchmark to validate the effectiveness and efficacy of LASER. Extensive experiments demonstrate that LASER produces impressive, consistent, and efficient results in animation generation, positioning it as a powerful tool for advanced digital content creation.
Instrument-tissue Interaction Detection Framework for Surgical Video Understanding
Mar 30, 2024Instrument-tissue interaction detection task, which helps understand surgical activities, is vital for constructing computer-assisted surgery systems but with many challenges. Firstly, most models represent instrument-tissue interaction in a coarse-grained way which only focuses on classification and lacks the ability to automatically detect instruments and tissues. Secondly, existing works do not fully consider relations between intra- and inter-frame of instruments and tissues. In the paper, we propose to represent instrument-tissue interaction as <instrument class, instrument bounding box, tissue class, tissue bounding box, action class> quintuple and present an Instrument-Tissue Interaction Detection Network (ITIDNet) to detect the quintuple for surgery videos understanding. Specifically, we propose a Snippet Consecutive Feature (SCF) Layer to enhance features by modeling relationships of proposals in the current frame using global context information in the video snippet. We also propose a Spatial Corresponding Attention (SCA) Layer to incorporate features of proposals between adjacent frames through spatial encoding. To reason relationships between instruments and tissues, a Temporal Graph (TG) Layer is proposed with intra-frame connections to exploit relationships between instruments and tissues in the same frame and inter-frame connections to model the temporal information for the same instance. For evaluation, we build a cataract surgery video (PhacoQ) dataset and a cholecystectomy surgery video (CholecQ) dataset. Experimental results demonstrate the promising performance of our model, which outperforms other state-of-the-art models on both datasets.
Medical Image Registration and Its Application in Retinal Images: A Review
Mar 25, 2024Medical image registration is vital for disease diagnosis and treatment with its ability to merge diverse information of images, which may be captured under different times, angles, or modalities. Although several surveys have reviewed the development of medical image registration, these surveys have not systematically summarized methodologies of existing medical image registration methods. To this end, we provide a comprehensive review of these methods from traditional and deep learning-based directions, aiming to help audiences understand the development of medical image registration quickly. In particular, we review recent advances in retinal image registration at the end of each section, which has not attracted much attention. Additionally, we also discuss the current challenges of retinal image registration and provide insights and prospects for future research.
HyperLLaVA: Dynamic Visual and Language Expert Tuning for Multimodal Large Language Models
Mar 20, 2024
Recent advancements indicate that scaling up Multimodal Large Language Models (MLLMs) effectively enhances performance on downstream multimodal tasks. The prevailing MLLM paradigm, \emph{e.g.}, LLaVA, transforms visual features into text-like tokens using a \emph{static} vision-language mapper, thereby enabling \emph{static} LLMs to develop the capability to comprehend visual information through visual instruction tuning. Although promising, the \emph{static} tuning strategy~\footnote{The static tuning refers to the trained model with static parameters.} that shares the same parameters may constrain performance across different downstream multimodal tasks. In light of this, we introduce HyperLLaVA, which involves adaptive tuning of the projector and LLM parameters, in conjunction with a dynamic visual expert and language expert, respectively. These experts are derived from HyperNetworks, which generates adaptive parameter shifts through visual and language guidance, enabling dynamic projector and LLM modeling in two-stage training. Our experiments demonstrate that our solution significantly surpasses LLaVA on existing MLLM benchmarks, including MME, MMBench, SEED-Bench, and LLaVA-Bench. ~\footnote{Our project is available on the link https://github.com/DCDmllm/HyperLLaVA}.
Are Dense Labels Always Necessary for 3D Object Detection from Point Cloud?
Mar 05, 2024
Current state-of-the-art (SOTA) 3D object detection methods often require a large amount of 3D bounding box annotations for training. However, collecting such large-scale densely-supervised datasets is notoriously costly. To reduce the cumbersome data annotation process, we propose a novel sparsely-annotated framework, in which we just annotate one 3D object per scene. Such a sparse annotation strategy could significantly reduce the heavy annotation burden, while inexact and incomplete sparse supervision may severely deteriorate the detection performance. To address this issue, we develop the SS3D++ method that alternatively improves 3D detector training and confident fully-annotated scene generation in a unified learning scheme. Using sparse annotations as seeds, we progressively generate confident fully-annotated scenes based on designing a missing-annotated instance mining module and reliable background mining module. Our proposed method produces competitive results when compared with SOTA weakly-supervised methods using the same or even more annotation costs. Besides, compared with SOTA fully-supervised methods, we achieve on-par or even better performance on the KITTI dataset with about 5x less annotation cost, and 90% of their performance on the Waymo dataset with about 15x less annotation cost. The additional unlabeled training scenes could further boost the performance. The code will be available at https://github.com/gaocq/SS3D2.
Flattening Singular Values of Factorized Convolution for Medical Images
Mar 01, 2024
Convolutional neural networks (CNNs) have long been the paradigm of choice for robust medical image processing (MIP). Therefore, it is crucial to effectively and efficiently deploy CNNs on devices with different computing capabilities to support computer-aided diagnosis. Many methods employ factorized convolutional layers to alleviate the burden of limited computational resources at the expense of expressiveness. To this end, given weak medical image-driven CNN model optimization, a Singular value equalization generalizer-induced Factorized Convolution (SFConv) is proposed to improve the expressive power of factorized convolutions in MIP models. We first decompose the weight matrix of convolutional filters into two low-rank matrices to achieve model reduction. Then minimize the KL divergence between the two low-rank weight matrices and the uniform distribution, thereby reducing the number of singular value directions with significant variance. Extensive experiments on fundus and OCTA datasets demonstrate that our SFConv yields competitive expressiveness over vanilla convolutions while reducing complexity.
ICON: Improving Inter-Report Consistency of Radiology Report Generation via Lesion-aware Mix-up Augmentation
Feb 20, 2024Previous research on radiology report generation has made significant progress in terms of increasing the clinical accuracy of generated reports. In this paper, we emphasize another crucial quality that it should possess, i.e., inter-report consistency, which refers to the capability of generating consistent reports for semantically equivalent radiographs. This quality is even of greater significance than the overall report accuracy in terms of ensuring the system's credibility, as a system prone to providing conflicting results would severely erode users' trust. Regrettably, existing approaches struggle to maintain inter-report consistency, exhibiting biases towards common patterns and susceptibility to lesion variants. To address this issue, we propose ICON, which improves the inter-report consistency of radiology report generation. Aiming at enhancing the system's ability to capture the similarities in semantically equivalent lesions, our approach involves first extracting lesions from input images and examining their characteristics. Then, we introduce a lesion-aware mix-up augmentation technique to ensure that the representations of the semantically equivalent lesions align with the same attributes, by linearly interpolating them during the training phase. Extensive experiments on three publicly available chest X-ray datasets verify the effectiveness of our approach, both in terms of improving the consistency and accuracy of the generated reports.
Scale Optimization Using Evolutionary Reinforcement Learning for Object Detection on Drone Imagery
Dec 23, 2023Object detection in aerial imagery presents a significant challenge due to large scale variations among objects. This paper proposes an evolutionary reinforcement learning agent, integrated within a coarse-to-fine object detection framework, to optimize the scale for more effective detection of objects in such images. Specifically, a set of patches potentially containing objects are first generated. A set of rewards measuring the localization accuracy, the accuracy of predicted labels, and the scale consistency among nearby patches are designed in the agent to guide the scale optimization. The proposed scale-consistency reward ensures similar scales for neighboring objects of the same category. Furthermore, a spatial-semantic attention mechanism is designed to exploit the spatial semantic relations between patches. The agent employs the proximal policy optimization strategy in conjunction with the evolutionary strategy, effectively utilizing both the current patch status and historical experience embedded in the agent. The proposed model is compared with state-of-the-art methods on two benchmark datasets for object detection on drone imagery. It significantly outperforms all the compared methods.
VSR-Net: Vessel-like Structure Rehabilitation Network with Graph Clustering
Dec 20, 2023The morphologies of vessel-like structures, such as blood vessels and nerve fibres, play significant roles in disease diagnosis, e.g., Parkinson's disease. Deep network-based refinement segmentation methods have recently achieved promising vessel-like structure segmentation results. There are still two challenges: (1) existing methods have limitations in rehabilitating subsection ruptures in segmented vessel-like structures; (2) they are often overconfident in predicted segmentation results. To tackle these two challenges, this paper attempts to leverage the potential of spatial interconnection relationships among subsection ruptures from the structure rehabilitation perspective. Based on this, we propose a novel Vessel-like Structure Rehabilitation Network (VSR-Net) to rehabilitate subsection ruptures and improve the model calibration based on coarse vessel-like structure segmentation results. VSR-Net first constructs subsection rupture clusters with Curvilinear Clustering Module (CCM). Then, the well-designed Curvilinear Merging Module (CMM) is applied to rehabilitate the subsection ruptures to obtain the refined vessel-like structures. Extensive experiments on five 2D/3D medical image datasets show that VSR-Net significantly outperforms state-of-the-art (SOTA) refinement segmentation methods with lower calibration error. Additionally, we provide quantitative analysis to explain the morphological difference between the rehabilitation results of VSR-Net and ground truth (GT), which is smaller than SOTA methods and GT, demonstrating that our method better rehabilitates vessel-like structures by restoring subsection ruptures.