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Tool Calling: Enhancing Medication Consultation via Retrieval-Augmented Large Language Models
Apr 27, 2024
Large-scale language models (LLMs) have achieved remarkable success across various language tasks but suffer from hallucinations and temporal misalignment. To mitigate these shortcomings, Retrieval-augmented generation (RAG) has been utilized to provide external knowledge to facilitate the answer generation. However, applying such models to the medical domain faces several challenges due to the lack of domain-specific knowledge and the intricacy of real-world scenarios. In this study, we explore LLMs with RAG framework for knowledge-intensive tasks in the medical field. To evaluate the capabilities of LLMs, we introduce MedicineQA, a multi-round dialogue benchmark that simulates the real-world medication consultation scenario and requires LLMs to answer with retrieved evidence from the medicine database. MedicineQA contains 300 multi-round question-answering pairs, each embedded within a detailed dialogue history, highlighting the challenge posed by this knowledge-intensive task to current LLMs. We further propose a new \textit{Distill-Retrieve-Read} framework instead of the previous \textit{Retrieve-then-Read}. Specifically, the distillation and retrieval process utilizes a tool calling mechanism to formulate search queries that emulate the keyword-based inquiries used by search engines. With experimental results, we show that our framework brings notable performance improvements and surpasses the previous counterparts in the evidence retrieval process in terms of evidence retrieval accuracy. This advancement sheds light on applying RAG to the medical domain.
Grounded Knowledge-Enhanced Medical VLP for Chest X-Ray
Apr 23, 2024Medical vision-language pre-training has emerged as a promising approach for learning domain-general representations of medical image and text. Current algorithms that exploit the global and local alignment between medical image and text could however be marred by the redundant information in medical data. To address this issue, we propose a grounded knowledge-enhanced medical vision-language pre-training (GK-MVLP) framework for chest X-ray. In this framework, medical knowledge is grounded to the appropriate anatomical regions by using a transformer-based grounded knowledge-enhanced module for fine-grained alignment between anatomical region-level visual features and the textural features of medical knowledge. The performance of GK-MVLP is competitive with or exceeds the state of the art on downstream chest X-ray disease classification, disease localization, report generation, and medical visual question-answering tasks. Our results show the advantage of incorporating grounding mechanism to remove biases and improve the alignment between chest X-ray image and radiology report.
GuideGen: A Text-guided Framework for Joint CT Volume and Anatomical structure Generation
Mar 12, 2024
The annotation burden and extensive labor for gathering a large medical dataset with images and corresponding labels are rarely cost-effective and highly intimidating. This results in a lack of abundant training data that undermines downstream tasks and partially contributes to the challenge image analysis faces in the medical field. As a workaround, given the recent success of generative neural models, it is now possible to synthesize image datasets at a high fidelity guided by external constraints. This paper explores this possibility and presents \textbf{GuideGen}: a pipeline that jointly generates CT images and tissue masks for abdominal organs and colorectal cancer conditioned on a text prompt. Firstly, we introduce Volumetric Mask Sampler to fit the discrete distribution of mask labels and generate low-resolution 3D tissue masks. Secondly, our Conditional Image Generator autoregressively generates CT slices conditioned on a corresponding mask slice to incorporate both style information and anatomical guidance. This pipeline guarantees high fidelity and variability as well as exact alignment between generated CT volumes and tissue masks. Both qualitative and quantitative experiments on 3D abdominal CTs demonstrate a high performance of our proposed pipeline, thereby proving our method can serve as a dataset generator and provide potential benefits to downstream tasks. It is hoped that our work will offer a promising solution on the multimodality generation of CT and its anatomical mask. Our source code is publicly available at https://github.com/OvO1111/JointImageGeneration.
Modality-Aware and Shift Mixer for Multi-modal Brain Tumor Segmentation
Mar 04, 2024
Combining images from multi-modalities is beneficial to explore various information in computer vision, especially in the medical domain. As an essential part of clinical diagnosis, multi-modal brain tumor segmentation aims to delineate the malignant entity involving multiple modalities. Although existing methods have shown remarkable performance in the task, the information exchange for cross-scale and high-level representations fusion in spatial and modality are limited in these methods. In this paper, we present a novel Modality Aware and Shift Mixer that integrates intra-modality and inter-modality dependencies of multi-modal images for effective and robust brain tumor segmentation. Specifically, we introduce a Modality-Aware module according to neuroimaging studies for modeling the specific modality pair relationships at low levels, and a Modality-Shift module with specific mosaic patterns is developed to explore the complex relationships across modalities at high levels via the self-attention. Experimentally, we outperform previous state-of-the-art approaches on the public Brain Tumor Segmentation (BraTS 2021 segmentation) dataset. Further qualitative experiments demonstrate the efficacy and robustness of MASM.
ZePT: Zero-Shot Pan-Tumor Segmentation via Query-Disentangling and Self-Prompting
Dec 07, 2023
The long-tailed distribution problem in medical image analysis reflects a high prevalence of common conditions and a low prevalence of rare ones, which poses a significant challenge in developing a unified model capable of identifying rare or novel tumor categories not encountered during training. In this paper, we propose a new zero-shot pan-tumor segmentation framework (ZePT) based on query-disentangling and self-prompting to segment unseen tumor categories beyond the training set. ZePT disentangles the object queries into two subsets and trains them in two stages. Initially, it learns a set of fundamental queries for organ segmentation through an object-aware feature grouping strategy, which gathers organ-level visual features. Subsequently, it refines the other set of advanced queries that focus on the auto-generated visual prompts for unseen tumor segmentation. Moreover, we introduce query-knowledge alignment at the feature level to enhance each query's discriminative representation and generalizability. Extensive experiments on various tumor segmentation tasks demonstrate the performance superiority of ZePT, which surpasses the previous counterparts and evidence the promising ability for zero-shot tumor segmentation in real-world settings. Codes will be made publicly available.
KiUT: Knowledge-injected U-Transformer for Radiology Report Generation
Jun 20, 2023
Radiology report generation aims to automatically generate a clinically accurate and coherent paragraph from the X-ray image, which could relieve radiologists from the heavy burden of report writing. Although various image caption methods have shown remarkable performance in the natural image field, generating accurate reports for medical images requires knowledge of multiple modalities, including vision, language, and medical terminology. We propose a Knowledge-injected U-Transformer (KiUT) to learn multi-level visual representation and adaptively distill the information with contextual and clinical knowledge for word prediction. In detail, a U-connection schema between the encoder and decoder is designed to model interactions between different modalities. And a symptom graph and an injected knowledge distiller are developed to assist the report generation. Experimentally, we outperform state-of-the-art methods on two widely used benchmark datasets: IU-Xray and MIMIC-CXR. Further experimental results prove the advantages of our architecture and the complementary benefits of the injected knowledge.
One for All: One-stage Referring Expression Comprehension with Dynamic Reasoning
Jul 31, 2022
Referring Expression Comprehension (REC) is one of the most important tasks in visual reasoning that requires a model to detect the target object referred by a natural language expression. Among the proposed pipelines, the one-stage Referring Expression Comprehension (OSREC) has become the dominant trend since it merges the region proposal and selection stages. Many state-of-the-art OSREC models adopt a multi-hop reasoning strategy because a sequence of objects is frequently mentioned in a single expression which needs multi-hop reasoning to analyze the semantic relation. However, one unsolved issue of these models is that the number of reasoning steps needs to be pre-defined and fixed before inference, ignoring the varying complexity of expressions. In this paper, we propose a Dynamic Multi-step Reasoning Network, which allows the reasoning steps to be dynamically adjusted based on the reasoning state and expression complexity. Specifically, we adopt a Transformer module to memorize & process the reasoning state and a Reinforcement Learning strategy to dynamically infer the reasoning steps. The work achieves the state-of-the-art performance or significant improvements on several REC datasets, ranging from RefCOCO (+, g) with short expressions, to Ref-Reasoning, a dataset with long and complex compositional expressions.
Attract me to Buy: Advertisement Copywriting Generation with Multimodal Multi-structured Information
May 07, 2022
Recently, online shopping has gradually become a common way of shopping for people all over the world. Wonderful merchandise advertisements often attract more people to buy. These advertisements properly integrate multimodal multi-structured information of commodities, such as visual spatial information and fine-grained structure information. However, traditional multimodal text generation focuses on the conventional description of what existed and happened, which does not match the requirement of advertisement copywriting in the real world. Because advertisement copywriting has a vivid language style and higher requirements of faithfulness. Unfortunately, there is a lack of reusable evaluation frameworks and a scarcity of datasets. Therefore, we present a dataset, E-MMAD (e-commercial multimodal multi-structured advertisement copywriting), which requires, and supports much more detailed information in text generation. Noticeably, it is one of the largest video captioning datasets in this field. Accordingly, we propose a baseline method and faithfulness evaluation metric on the strength of structured information reasoning to solve the demand in reality on this dataset. It surpasses the previous methods by a large margin on all metrics. The dataset and method are coming soon on \url{https://e-mmad.github.io/e-mmad.net/index.html}.